Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1394 ATGATAGCTTTGAGAGACAGTTATATAGGCACCCTTTCCATGATCAATTCCTTCCTAAACCCAAACACAAACCCACTCATTACCACTATATATTTTTTCATTCCACTTCATTCCCTCAACCACAACAACATGAGAAACCCTTCATCAACTTCAACAACCAAGAACAAGAAGAGTAGTGGTGGTGGTAACAGCACTACCACCAGCTACCATAGCAACAATAGCAACAACAATAACATTAGTAGCAGCAATAATAATGGTTCCAACACCAACACTCCATGCTGCAGCAAGGTTGGCTTGAAGAGAGGACCATGGACACCAGAAGAAGATGAGGTGTTAGCCAATTACATCAAGAAAGAAGGAGAAGGGCGTTGGAGAACGCTCCCCAAGCGTGCTGGCCTTCTCCGGTGCGGCAAAAGCTGCCGTCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATAGCCCCTGATGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGCAACCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACCCATCTAAGTAAAAAGCTCATTAGCCAAGGGATTGATCCCAGAACTCACAAACCTCTCAACCCACCATCCATGAATATCAATATTCCTTCTTCTTCTACTCCTTCTACTACTTTCACTGTTACTCCACCCTCTATGCCTCCTCCAATGATCATCACCAGCCACAACCCTTGCCATGATCTCACTGTTGTTAATCAAGGAATTCATGCCATTCATCATTTGGGTCAACACCTCCAACCTCCCGTTTCAAACCCCTTTGATAATAACAACATTAGCAATCAAGTGGCTGCTGTCACAGATGATGTTTCTGCAATGGGGTTCATGGACAGTGAGGATTGCAACGATGATATCAACATCAATTATTACTCCGATGATGTTTTTTCTTCCTTCCTCAACTCCTTGATCAACGAGGATGCTTTTGCGTCGCAGCAGCACCACGTGCAAACAGAGCTCCCCAGTGAGCGTTGCATTCCACTGCCGTGTGATGATCGTGTGGATGATCCTCTGGTTTCAATCACAACTGCTTCTACATCGCAGGGTTACGATGATGACCTTGGGGTTCTCTGGGAATCATCTCTCGTGCCTTCTACTACTTTCACCCATCACGTTAACGACCCCATCATCAAGATGGCTCATGATCACCATCACCACAATCAATAG 1248 0.4623 MIALRDSYIGTLSMINSFLNPNTNPLITTIYFFIPLHSLNHNNMRNPSSTSTTKNKKSSGGGNSTTTSYHSNNSNNNNISSSNNNGSNTNTPCCSKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSMNINIPSSSTPSTTFTVTPPSMPPPMIITSHNPCHDLTVVNQGIHAIHHLGQHLQPPVSNPFDNNNISNQVAAVTDDVSAMGFMDSEDCNDDININYYSDDVFSSFLNSLINEDAFASQQHHVQTELPSERCIPLPCDDRVDDPLVSITTASTSQGYDDDLGVLWESSLVPSTTFTHHVNDPIIKMAHDHHHHNQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1394 415 SUPERFAMILY Homeodomain-like 98 195 IPR009057 -
Vra6g1394 415 MobiDBLite consensus disorder prediction 217 233 - -
Vra6g1394 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 148 IPR017930 -
Vra6g1394 415 MobiDBLite consensus disorder prediction 208 233 - -
Vra6g1394 415 SMART sant 100 150 IPR001005 -
Vra6g1394 415 SMART sant 153 201 IPR001005 -
Vra6g1394 415 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 84 348 - -
Vra6g1394 415 CDD SANT 103 148 IPR001005 -
Vra6g1394 415 Gene3D - 98 154 - -
Vra6g1394 415 Pfam Myb-like DNA-binding domain 159 199 IPR001005 -
Vra6g1394 415 Pfam Myb-like DNA-binding domain 101 148 IPR001005 -
Vra6g1394 415 Gene3D - 158 220 - -
Vra6g1394 415 CDD SANT 159 199 IPR001005 -
Vra6g1394 415 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Vra6g1394 415 MobiDBLite consensus disorder prediction 44 89 - -
Vra6g1394 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 203 IPR017930 -
Vra6g1394 415 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Vra6g1394 415 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 84 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1394 Vra-Chr6 27371649 27373794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1394 87 333 MYB Transcription Factor Family AT3G13540 56.275 5.41e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1394 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1394 K09422 - gmx:100797847 469.929