Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1393 ATGGATAAGCATGTGGTTCTTCTTTCTCTCCTAATTTTCTTCTTCACTGTTTCCATATCTGGTGTTTCATCCACCACATGCCCCATGGATCTCAGCTACGTTGAGACCTATCCCTGGGATACTTCATCTTGCAGAGACCCTGTTGTTGATAAGGAGCACTGTTGTCAAGCTTTGCTCAGTGTAATTGGCATGGGGTTGGCCCAACACCTCAAAAACACTTCCTACTTTCAACTTCCTGATGAAAACACTTCCTCCACCTGCTTGTTAGATTTCCAAACCAAAGTTTCAGCCTTGTCAATTAACTCCTCTTTGGTCCCTTATTGTTTTCCTAGAGCTTCTGAGTTTGTTACCAACACTTCAACTTGTGCAGGAATCATAACTGTAGATGATTGGAAGAGTAAAGTGGGTATTATAAGCCCCTTGGATGCTTCTTGCAATGGGGACATGAGTGATCAAACCCGTTGCAGCCTTTGTACTGATGCTGGCCTCAAAGTGACTTCCCACCTCAATAGTTTGGACCCAAATGGCACAAAGTGCTTTTACTTCACAGTTTTGTATGCCTCGGCTATTGTTAATCAGTATGGTCCAACAAATTTGGGCACCGCTGGTTGCATACTGGGCTTGCCGCTGTCTGTGAAAGGTTCATCGAATAAAAAACAAGAGCTGAAACTTGTTTTTGGGTTGGTGGGTGCGTTTACTGGGGTTGTGCTTGGTTTTGTGTTGATTGTGGTGTACAGAAAGTGGGATAAGAAAAGGAAGGAAGATAAGTATCACAGGTCGGTTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAATACTGGTGCCAAATGGTTTCGCATATCGGAGCTTGAGCGAGCCACTGGTAAATTTTCTCAGAAGAATATGGTTGGCCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGCACTTTGGTTGCGGTAAAGGAAATTTTTGATTTGGAGACAAAAGGGGATGAAGATTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGCTGTTGCATTTCAAGTGATAATTTGAAAGGCAAGAGAAGGTTTTTGGTTTATGATTTCATGCCAAATGGCAGCCTCAGTTACCAGTTATCAGTTTCTGGTGCTAATAGGTTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAGATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACGAACATACTTTTGGATTCAAAAATGAAAGCAAAAGTGTCAGATTTTGGGTTGGCGAAGCAAGGGAATGATGGCCAGTCTCATCTCACAACAAGAGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTCTTTATGGGCAACTGACAGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAAATCATGAGTGGAAGAAAAGTGCTTGATACCATGAATTCATCGGTTGTTTTGATCACGGATTGGGCATGGACACTGGCAAAATCAGGGAACGTGGAAGAGATTTTTGACCAGTCAATAAAGGAAGAAGGACCAGAGAAGATCATGGAAAGGTTTGTTCTTGTGGGAATACTCTGTGCTCATGCAATGGTGGCTTTAAGACCTACTATTGCTGAGGCCCTTAAGATGTTAGAGGGTGACATTGACATACCCCAATTACCTGACAGACCAGTGCCATTGGGTCAAGAAGCCTTCCAATCTTCTTTGCAGCATGGTTTGCAAACTAGCGTAGGATCATCCTCCTATTTTTCTTCATATCTTGCATCGTATTCATCAAGCACTAGAACAACATAG 1851 0.4284 MDKHVVLLSLLIFFFTVSISGVSSTTCPMDLSYVETYPWDTSSCRDPVVDKEHCCQALLSVIGMGLAQHLKNTSYFQLPDENTSSTCLLDFQTKVSALSINSSLVPYCFPRASEFVTNTSTCAGIITVDDWKSKVGIISPLDASCNGDMSDQTRCSLCTDAGLKVTSHLNSLDPNGTKCFYFTVLYASAIVNQYGPTNLGTAGCILGLPLSVKGSSNKKQELKLVFGLVGAFTGVVLGFVLIVVYRKWDKKRKEDKYHRSVENGVRNSVLPNTGAKWFRISELERATGKFSQKNMVGQGGDGVVYKGTLSDGTLVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLPLRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSVSGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNDGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNVEEIFDQSIKEEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGQEAFQSSLQHGLQTSVGSSSYFSSYLASYSSSTRTT* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1393 616 ProSiteProfiles Protein kinase domain profile. 290 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1393 616 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 11 600 - -
Vra6g1393 616 Pfam SPARK 23 179 IPR043891 -
Vra6g1393 616 Pfam Protein kinase domain 291 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1393 616 Gene3D Transferase(Phosphotransferase) domain 1 371 569 - -
Vra6g1393 616 Gene3D Phosphorylase Kinase; domain 1 250 370 - -
Vra6g1393 616 SUPERFAMILY Protein kinase-like (PK-like) 275 579 IPR011009 -
Vra6g1393 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vra6g1393 616 PANTHER OS01G0253100 PROTEIN 11 600 IPR045271 GO:0004714|GO:0006468
Vra6g1393 616 CDD STKc_IRAK 296 565 - -
Vra6g1393 616 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1393 Vra-Chr6 27347887 27350103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1393 16 585 Receptor kinase-like Gene Family AT1G11050 52.801 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra6g1393 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1393 - - ccaj:109788171 1013.83