Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1392 ATGGAAAACCACGTAAGATTTCTCCTTCTGTTCCTCTTCATCACCATTCTCTTACCAGCTGCTGCTCCTTCATCTTGTCCAATCAACTTCTCCTACGTTCAAACCATCCCTTGGAACACTTCAACTTGCACAAACACAACCAACAAACAACCTTGTTGCTCAACCCTCAAAACCATCTTCCACATAGGCCTCTCCCAACATCTCAAACAAACATCGTTTTTTCAACTTCCCAATGAAAACACTTCCTCCATTTGCTTATCAGATTTCCAAGAAAAACTCACAACCTTGTCAATTCACCCATCTCTGGTCCCTTCTTGCTTCCCTAACCCCTCTCAGTTCGTCACAAACTCTTCCACATGTGCAGGTGTTGTGACTTCTCGAGATTGGGAACAGAAGGTGAACTCGGTTAGACTTAGCCCGATGCAGACTTTATGCAAAGACCTTGATGACCAAACTAGCTGCAACAATTGCATAGCAGCAAGCTTGAAAGTGGCTATTCAGCTTACTATTGATAACCCAAATGCCACTGAGACGGGTTGTTTTTCGTTTGCATCGCTGTATGCTGCAGCGGTTGTTAATCCAGAAGGCACAACTGATGTCACCACGATCGGTTGCATAATGGGTGTGCAACTTTCTAGTGAAGTGGCAAAAGGGTCATCAAAAAAGAGAGGAAAAGTTCTTGAGGTGGTTTTTACGTTATTGGGTGCTGTTGTTGGGGTTATTATTGTTTTTGTGCTGATGGTGGTTATGTACAGGAAGTGGGAAAAGAGAAGGAAGGAAAATGTTTATCACAGGGAAATTGAAAACGGTATCAGGAACAGTGTTTTGACGAACACTGGTGCAAAATGGTTTCACATATCGGAGCTTGAACGTGCCACCAACAGATTTTCGAGGAGGAATAAGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGAAGCTTGCAGATGGCACTTTGATTGCTGTTAAGGAGAATTTGAATTTGCAAAGTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGATATCATAAGCAAAATAAAGCACAGGAACCTTCTTGCTCTTCGTGGTTGTTGCATTTCAAGTGATAATTTCAAAGGTAAGAGAAGGTTTCTGGTTTATGATTTCATGCCAAATGGCAACCTCAGTTACCAACTGTCACTTGGTGGATTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAGCCACCAGTTTATCATCGTGATATAAAGGCTACAAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCATGCAAGGTAGTGAGGATCAGTCTCCTCTCACCACAAGGGTTGCTGGCACATATGGTTATGTGGCACCTGAGTATGCTTTATATGGGAAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGTATTGTGATTCTGGAAATCATGAGTGGAAGAAAAGTGCTTGATACTTTGAATTCATCAGCAGATGCAATCACAGATTGGGTGTGGACACTAGCAGAATCGGGAAAGATGATGGAAATTTTTGATGAGTCAATAAGAGAAGGGCCAGGGAAAATTATGGAAAGGTTTGTTCATGTGGGAATGCTCTGTGCTCATGCAATGGCTGCTTTGAGACCTACCATTGCTGAGGCTCTTAAGATGTTAGAGGGTGACACTGACGTTCCTAAATTACCTGATAGGCCTGTGCCTTTGGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAAGGAAGCGGAAGATCTATGCAACATGTTTCATCCTATTCATGA 1827 0.4269 MENHVRFLLLFLFITILLPAAAPSSCPINFSYVQTIPWNTSTCTNTTNKQPCCSTLKTIFHIGLSQHLKQTSFFQLPNENTSSICLSDFQEKLTTLSIHPSLVPSCFPNPSQFVTNSSTCAGVVTSRDWEQKVNSVRLSPMQTLCKDLDDQTSCNNCIAASLKVAIQLTIDNPNATETGCFSFASLYAAAVVNPEGTTDVTTIGCIMGVQLSSEVAKGSSKKRGKVLEVVFTLLGAVVGVIIVFVLMVVMYRKWEKRRKENVYHREIENGIRNSVLTNTGAKWFHISELERATNRFSRRNKVGQGGDGVVYKGKLADGTLIAVKENLNLQSKGDEEFCYEVDIISKIKHRNLLALRGCCISSDNFKGKRRFLVYDFMPNGNLSYQLSLGGLTWPQRKNIILDVAKGLAYLHYEIKPPVYHRDIKATNILLDSKMNAKLADFGLAMQGSEDQSPLTTRVAGTYGYVAPEYALYGKLTEKSDVYSFGIVILEIMSGRKVLDTLNSSADAITDWVWTLAESGKMMEIFDESIREGPGKIMERFVHVGMLCAHAMAALRPTIAEALKMLEGDTDVPKLPDRPVPLGHASFQSSLLHGLQGSGRSMQHVSSYS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1392 608 Gene3D Transferase(Phosphotransferase) domain 1 377 573 - -
Vra6g1392 608 CDD STKc_IRAK 302 567 - -
Vra6g1392 608 Gene3D Phosphorylase Kinase; domain 1 257 376 - -
Vra6g1392 608 SUPERFAMILY Protein kinase-like (PK-like) 275 566 IPR011009 -
Vra6g1392 608 Pfam SPARK 22 176 IPR043891 -
Vra6g1392 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vra6g1392 608 SMART serkin_6 296 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1392 608 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 14 592 - -
Vra6g1392 608 PANTHER OS01G0253100 PROTEIN 14 592 IPR045271 GO:0004714|GO:0006468
Vra6g1392 608 Pfam Protein kinase domain 297 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1392 608 ProSiteProfiles Protein kinase domain profile. 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1392 Vra-Chr6 27333197 27335137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1392 20 595 Receptor kinase-like Gene Family AT1G11050 48.525 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra6g1392 Pkinase 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1392 - - gmx:100798901 952.199