Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1390 TCTTCTTCATGTCCAATGGATCTCACATATGTTGAAACCATTCCCTGGAACTCTTCAACCTGCAAAGACCCTGTTAACAAAAATCTCTGTTGCCAAGCCCTTTCCAGCATCTTCGGCATAGGCCTTGCTGAACATCTCAAAGAAACATCCATGTTTTACCTTTCTGATGTAAACACTTCCTCCACTTGCTTATCTGATTTCAAACACCACCTTGCAGCCATCTCAGTAAAACCAAACATAGTCTCTTTTTGCTTCCCTCACCCAACCCAGTTTGTCACTAACTCTTCAGCTTGTGCAGGGATTACAACTCTACAAGATTGGAACCAAAAGGTCGCCATGGATAGCCCAGTGAAAACATCGTGCAAAGGGGACCTTAAAGACCAAACTCTCTGCACTGTGGCTAATCCGTTTGGGACGACAGATCTAAGCACTACTGGATGCATACTTGGCCTGACACAACCATCTAATGCAGTAACAAGAGGGTCATCAAACAAAAGAAGAAAAAAGATCAAGCTTGTTATTATGTTGTTGGGTGGTGTTGTGTTTGCTTTTGCTCTTGCTCTGATGGTCGTGTACAGGAAGTGGGATACGAGAAGGAAGAAAAATGTTCATCGCAGGGAAGTTGAAAACGAGGTTAGTGCTGGTGTTTTTCCTCGTACAGGTGCTAAATGGTTTCACATATCAGAGCTGGAACGTGGCACGAGTAAATTTTCAGAGAGTAATGTGATTGGGAAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGAACTTTGGTTGCCGTTAAGGAAATTTTTGGTTTGGAAAGTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGATGTTGTGTTACAAGTGATAATTTGAAAGGTAAGAGGAGGTTTTTGATTTATGAGTTTATGCCTAATGGAAGCTTGAGTGATCATTTGTGTTCTTATGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAAGCTACCAATATCCTTTTGGATTCCAAAATGCATGCTAAATTGGCAGATTTTGGGTTGGCCAAGCAGGGTAATGATGGTAAATCTCATCTAACTACAGGGGTTGCTGGCACATATGGTTATGTAGCACCAGAATATGCACTGTATGGGCAACTAAGTGAGAAAAGTGACGTGTACAGTTTCGGTATAGTGATTCTAGAAATCATGAGTGAAAGAAAAGTGTTTGATACTTTGAATTCATCCACGGATTCAGTTACAGATTGGGTATGGGCACTTGCAGAAACTGGAAAGGTGGAGGAAATTTTTGAGGAGTCAATAAGAGAAGGGTCAGTGAAAAGTATGGAAAGGTTTGTTTATGTTGGAATGCTATGTTCTCATTTGGTAGTGGCGTTTAGACCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGTGAGATTGACATTCCTGAATTACCTGAGAGGCCAGTGCCACTTGGCCATGCGTCCTTTCAATCTTCTGTGTTGCATGGTTTGCAGAGAAGTGGTGGAGAACGTGTCAGCTTGTAA 1647 0.4189 SSSCPMDLTYVETIPWNSSTCKDPVNKNLCCQALSSIFGIGLAEHLKETSMFYLSDVNTSSTCLSDFKHHLAAISVKPNIVSFCFPHPTQFVTNSSACAGITTLQDWNQKVAMDSPVKTSCKGDLKDQTLCTVANPFGTTDLSTTGCILGLTQPSNAVTRGSSNKRRKKIKLVIMLLGGVVFAFALALMVVYRKWDTRRKKNVHRREVENEVSAGVFPRTGAKWFHISELERGTSKFSESNVIGKGGDGVVYKGTLSDGTLVAVKEIFGLESKGDEEFCYEVEIISKIKHRNLLPLRGCCVTSDNLKGKRRFLIYEFMPNGSLSDHLCSYGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMHAKLADFGLAKQGNDGKSHLTTGVAGTYGYVAPEYALYGQLSEKSDVYSFGIVILEIMSERKVFDTLNSSTDSVTDWVWALAETGKVEEIFEESIREGSVKSMERFVYVGMLCSHLVVAFRPTIVEALKMLEGEIDIPELPERPVPLGHASFQSSVLHGLQRSGGERVSL* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1390 548 SMART serkin_6 237 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1390 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Vra6g1390 548 Pfam Protein kinase domain 238 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1390 548 Gene3D Phosphorylase Kinase; domain 1 196 317 - -
Vra6g1390 548 SUPERFAMILY Protein kinase-like (PK-like) 218 510 IPR011009 -
Vra6g1390 548 Pfam SPARK 1 132 IPR043891 -
Vra6g1390 548 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 147 537 - -
Vra6g1390 548 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 132 - -
Vra6g1390 548 CDD STKc_IRAK 243 511 - -
Vra6g1390 548 ProSiteProfiles Protein kinase domain profile. 237 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1390 548 Gene3D Transferase(Phosphotransferase) domain 1 318 515 - -
Vra6g1390 548 PANTHER OS01G0253100 PROTEIN 147 537 IPR045271 GO:0004714|GO:0006468
Vra6g1390 548 PANTHER OS01G0253100 PROTEIN 3 132 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1390 Vra-Chr6 27292027 27293775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1390 1 544 Receptor kinase-like Gene Family AT1G11050 45.663 5.04e-168 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra6g1390 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1390 - - vra:106763645 1103.58