Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1389 ATGGATAAGCAAGTGAGGCTATTCCTTCTTCATTTGATGTCCCTCTTGATCGTGTTCACACATGGAGCTGCTGCATCTTCCACATGCCCCATGGATCTCTCCTACGTTGCTTCCATTCCCTGGAACACCTCAATATGCAGAGGCCATTTTGACAAGGATCACTGTTGCGACACGCTAAGGAGTGTTTTTGCCATTGGCCTCGCTGAGCTCCTCAAAGATACTCACTTATTTTACCTTCCTGATGCAAACACTTCCTCCGCTTGCTTACATGACTTCACACGCAGGCTTTCAGCCTTGTCCATCAGCCAAAACATGGTCCCTCTTTGCTTCCCCAACCCATCACGCTTTGTTTTCAACTCTTCGGCTTGTTTAGGTATCAGAACCACGCAAGATTGGAACTTTAGGGTGGACCGGAATACCCCTTTGTATTCAACTTGCAATAAGGACCTCAAAGACAAAACTCGCTGCAGAGTTTGCTCTGAGGCTGCTCACACACTCACAGAGAAGCTCACAGCATTTGACCCTAATGCTGACGCCAAAAGGTGTTTTTACTACATTGCGCTGTACGCTGCAGCTGTTGTTAACCCGTTTGGTACAACCGATATAAGCACCACTTCTTGCATACTTTGCCTGGAGCATGATGTGGTGGTACACGGGTCAAGTCATGGAGTAGAACTGTGGAAGCTGGGTTTTGCGTTGTTGGGTGTTGTTATTGGTGTTGTTCTTGCTTTTGTGATGATTGTTGTGTACAGGAAATGGGATAAGAGAAAGAAGCAGAGTGTTCATCACAGGGAGATTGAGAACAAGGTCAGAGCATGTGTTTTGCCTAATGCTGGGGCAAAATGGTTTCGTGTAGAGGAGCTTGAGCGTGCAACTGAGAGATTTTCGCGGAAGAATGTGGTTGGTCAAGGTGGTGATGGAGTTGTGTATAAAGGTACTCTTTCTGATGGTGCTGTGGTTGCTGTTAAGGAGATTTATTATTTGGAGGGTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCTCTTCGGGGATGTTGCATTTCGAGTGATGATTTGGAAGGTAAGAGAAGGTTTATGATTTACGATTTTATGCCTAATGGGAGTCTCAGTGACCAAATGTGTTCAGATGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAAGATAATCTTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTACCATCGTGACATAAAGCCTACCAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGTTCTGAGGATGAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATGTAGCACCAGAGTATGCTCTCTATGGGCAACTAACTGAGAAAAGTGATGTCTATAGTTTCGGTATTGTTATTCTTGAAATCATGAGTGGAAGGAAGGTGCTTGATGTTTTGGATTCATCTGCTTGTTTAATTACAGATTGGGTATGGACAATGACAGAATCTGGAAAGATGGAGGAAGTTTTTGATCTGTCAATAAGAGAAGGGCAAGAAAAAATTATGGAAAGGTTTGTTCTTGTTGGAATGCTATGTTCTCATTTGGCAGTGGCATCAAGGCCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGAGTCATTGACATTCCCAAATTACCTGAGAGGCCAATGCCACTGGGTCATGAGTCTTTCCAATCTTCTTTGTTGCATGGTTTACAAAGAAGTGCTTAA 1803 0.4365 MDKQVRLFLLHLMSLLIVFTHGAAASSTCPMDLSYVASIPWNTSICRGHFDKDHCCDTLRSVFAIGLAELLKDTHLFYLPDANTSSACLHDFTRRLSALSISQNMVPLCFPNPSRFVFNSSACLGIRTTQDWNFRVDRNTPLYSTCNKDLKDKTRCRVCSEAAHTLTEKLTAFDPNADAKRCFYYIALYAAAVVNPFGTTDISTTSCILCLEHDVVVHGSSHGVELWKLGFALLGVVIGVVLAFVMIVVYRKWDKRKKQSVHHREIENKVRACVLPNAGAKWFRVEELERATERFSRKNVVGQGGDGVVYKGTLSDGAVVAVKEIYYLEGKGDEEFCYEVEIISKIKHRNLLALRGCCISSDDLEGKRRFMIYDFMPNGSLSDQMCSDGANRLTWPQRKKIIFDVAKGLAYLHYEIKPPIYHRDIKPTNILLDSKMNAKLADFGLAKQGSEDESHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDVLDSSACLITDWVWTMTESGKMEEVFDLSIREGQEKIMERFVLVGMLCSHLAVASRPTIVEALKMLEGVIDIPKLPERPMPLGHESFQSSLLHGLQRSA* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1389 600 SMART serkin_6 295 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1389 600 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 10 594 - -
Vra6g1389 600 SUPERFAMILY Protein kinase-like (PK-like) 278 568 IPR011009 -
Vra6g1389 600 ProSiteProfiles Protein kinase domain profile. 295 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1389 600 Gene3D Transferase(Phosphotransferase) domain 1 376 575 - -
Vra6g1389 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vra6g1389 600 PANTHER OS01G0253100 PROTEIN 10 594 IPR045271 GO:0004714|GO:0006468
Vra6g1389 600 Pfam SPARK 25 182 IPR043891 -
Vra6g1389 600 Gene3D Phosphorylase Kinase; domain 1 254 375 - -
Vra6g1389 600 Pfam Protein kinase domain 296 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1389 Vra-Chr6 27287132 27289174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1389 24 597 Receptor kinase-like Gene Family AT1G11050 48.173 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra6g1389 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1389 - - gmx:100800481 881.322