Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1387 ATGAAAAATCGGTTTTCTCCTAATATTTGCGCACACGAAATGTCCACGAAAAATCGTCGCTCGTCGTTTTCCTCCTCAACGGCGTCGTCTCTGGCCAAACGACATTCATCCGTCGTGTCTTCCGTGAAAGCTGCGAAGAGAGCGCCGCTCGCCAACATCACAAACGAGAGGAATGCGCCTTCCTCATCTTCGGTGTCAAGTTCAATTAAAACTGCCAAGACCAAGAAAGAGGATCCCGCAAGAAGAAGTAGCATCACAAGATCAACAACTTGTGCAAACAAATTACGTGAGTTAAAGACTATTAACTCAGGCACAACTATCATTCCAAAGGCTAATTCCTTACCACAAACGAAGGATGCTGTTGCTGCAGTTGCCAGAGTCTCTGTGTCGGTTCAGAGCAGCATTGATGTTTCTCCTAGTAAATCAGATGCAAGGTCTGTTTCTATGGATGAAACGTTATCTTCTTCTTATTCAATGAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCTCAGCGGTTGGTTCAATTCAGAGAAAGACAAACAATTTAAGCATTTGTGATACCACCAAGCCAGAAGGTAACATATATAGTGGGGAAATAGTTGGTAATTTGAAAAGAGAGGGCAAGGTTGTCAATATTGATAACATTTGCTCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCCATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTACCTGATACATTGTATTTGACAGTGAACTACATTGATCGGTATCTTTCAGGGAATGCCATGAATAGGAAAAGATTACAATTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCAGAGGTGCAGGACTTTTGTTATATAACTGATAATACGTACTTAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTGCTCATGATGTCCAAGAGCTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCTCTCTTGGAGTACAATATGCTGCGTTATCCTCCATCACTGATAGCTGCTTCGGCAACTTTCCTTGGCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCACCATTACACACAATACTGGCCTTCTGATTTGTGTGCTTGTGTGAAAGATCTCCATCGCCTTTGTTGCAGTAGCGATACTTCTAATTTACCTGCCATCCGAGAGAAATACAGTCAGCACAAGGCCAAGTTTTGA 1437 0.4196 MKNRFSPNICAHEMSTKNRRSSFSSSTASSLAKRHSSVVSSVKAAKRAPLANITNERNAPSSSSVSSSIKTAKTKKEDPARRSSITRSTTCANKLRELKTINSGTTIIPKANSLPQTKDAVAAVARVSVSVQSSIDVSPSKSDARSVSMDETLSSSYSMKSPDEVEYLDNRDVSAVGSIQRKTNNLSICDTTKPEGNIYSGEIVGNLKREGKVVNIDNICSDPQLCATYACDIYKHLRESEEKKRPSTDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRKRLQLLGVSCMMIASKYEEICAPEVQDFCYITDNTYLKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVQELPSLQLECLTNFIAELSLLEYNMLRYPPSLIAASATFLGRFILFPSKKPWNSILHHYTQYWPSDLCACVKDLHRLCCSSDTSNLPAIREKYSQHKAKF* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1387 478 PANTHER CYCLIN-A1-1 36 478 - -
Vra6g1387 478 MobiDBLite consensus disorder prediction 1 37 - -
Vra6g1387 478 Pfam Cyclin, N-terminal domain 232 358 IPR006671 -
Vra6g1387 478 PIRSF Cyclin_A_B_D_E 9 478 IPR039361 -
Vra6g1387 478 Pfam Cyclin, C-terminal domain 361 476 IPR004367 -
Vra6g1387 478 ProSitePatterns Cyclins signature. 263 294 IPR006671 -
Vra6g1387 478 CDD CYCLIN 359 453 IPR013763 -
Vra6g1387 478 SMART Cyclin_C_2 361 477 IPR004367 -
Vra6g1387 478 MobiDBLite consensus disorder prediction 134 157 - -
Vra6g1387 478 SMART cyclin_7 365 454 IPR013763 -
Vra6g1387 478 SMART cyclin_7 268 352 IPR013763 -
Vra6g1387 478 MobiDBLite consensus disorder prediction 1 88 - -
Vra6g1387 478 Gene3D - 232 476 - -
Vra6g1387 478 MobiDBLite consensus disorder prediction 54 70 - -
Vra6g1387 478 Gene3D - 246 359 - -
Vra6g1387 478 SUPERFAMILY Cyclin-like 221 358 IPR036915 -
Vra6g1387 478 CDD CYCLIN 262 351 IPR013763 -
Vra6g1387 478 PANTHER CYCLINS 36 478 IPR039361 -
Vra6g1387 478 SUPERFAMILY Cyclin-like 361 476 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1387 Vra-Chr6 27251044 27255211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1387 17 478 Core Cell Cycle Gene Families AT1G44110 58.071 8.17e-173 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1387 K06627 - gmx:100776207 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1387 6 27251044 27255211 Vra6g1387 6 27251044 27255211 ECH
Vra6g1387 6 27251044 27255211 Vra5g0760 5 12973508 12978159 PCT