Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1378 ATGGATCAACGTGAAGAAGGCAAACAACAACCATCCCAGAAAACACCATCAGACAATCAGCTTGACCCAGTTGATAGTTCTGACAATATTGCTCCAGAAAATGGTTATCAGGAGCAAAGTGGCACATTCACAACGTTTGCATCATTAGAAAGTGGAACTGAGAGTGAGTCCTCTTTGGATGACCATGATGAAGATTCTGACTTTTTTCTGAGCCAGGAGTTTGAATCTGAACTTCAGTTTCTTGAGAGCGAAGGGAGCAATGATGATGATGATGATGATGAAGAAATGGAGGAAGATGAGATCGATGTGGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGATTTTATAGGGCGAGAGAAGAGAGGGTTATCAGGAAGTGAAATTTGTTCATGCTTGCATTCTTACAGTTTTCATTCTGCAGAAAGCAAAAGTGGAGTTGATCTTTGTGTGATTTGCCAGGTTGAATATGAAGAAGGTGAAGCCCTAGTAGCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCTATATGCAACACTGAAATTTCTGCTCCCAAGGTAGTTAGTTAA 609 0.4089 MDQREEGKQQPSQKTPSDNQLDPVDSSDNIAPENGYQEQSGTFTTFASLESGTESESSLDDHDEDSDFFLSQEFESELQFLESEGSNDDDDDDEEMEEDEIDVDELTYEELIELGDFIGREKRGLSGSEICSCLHSYSFHSAESKSGVDLCVICQVEYEEGEALVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKVVS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1378 202 MobiDBLite consensus disorder prediction 12 54 - -
Vra6g1378 202 ProSiteProfiles Zinc finger RING-type profile. 151 192 IPR001841 -
Vra6g1378 202 Pfam RING-H2 zinc finger domain 149 192 IPR024766 GO:0008270
Vra6g1378 202 MobiDBLite consensus disorder prediction 1 101 - -
Vra6g1378 202 MobiDBLite consensus disorder prediction 57 71 - -
Vra6g1378 202 SUPERFAMILY RING/U-box 110 198 - -
Vra6g1378 202 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 4 199 - -
Vra6g1378 202 SMART ring_2 151 191 IPR001841 -
Vra6g1378 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 199 IPR045191 GO:0061630
Vra6g1378 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 199 IPR013083 -
Vra6g1378 202 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1378 Vra-Chr6 27124806 27125785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1378 86 195 C3H Transcription Factor Family AT3G63530 47.368 3.40e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1378 K19045 - gmx:100780686 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1378 6 27124806 27125785 Vra6g1378 6 27124806 27125785 ECH
Vra5g0783 5 13427713 13429437 Vra6g1378 6 27124806 27125785 PCT