Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1376 ATGGCCGCACCGCAACTTCACTTTCCCCCAGGATTCAGATTCCACCCTACAGACGAAGAACTCGTCGTTCATTACCTCTGCCGCAAATGCCTCAACCAACAAATCGCCGTTCCCATAATCGCCGAAATCGACCTCTACAAATACGACCCTTGGTACCTCCCTGGAATGGCGTTGTACGGAGAGAAAGAGTGGTATTTCTTCTCGCCGAGGGACCGAAAGTATCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTACTGGAAAGCAACCGGAGCAGATAAACCGATTGGTAAACCGAAACCGGTTGGTATAAAAAAAGCCTTGGTGTTTTACGCTGGAAAAGCGCCCAAGGGAGAGAAGACAAACTGGATCATGCACGAGTATCGTCTCGCCGAGGTGGACCGTTCCGTTCGCAGAAAAAACAGCTTGAGGCTGGATGACTGGGTACTGTGTCGCATATACAACAAGAAAAGCGCGGTTGAGAAGCAACCGCCGGTCAAAATTGAGTGTTCCGAACTGGCGGACGAGAAGCCGGCGATTGCGCGGCCGTACGCGGAGGTAAAGGTGGCGGACTGCGTGAACTTCGAGGGGTCGGACTCGGTGCCGCGGCTGCTGACGATGGACTCGAGCTGCTCGGAGCAGGTGGTCTCGCCGGAGCCGGCGAGCGAGGCGCAGAGTGAGCCGAAGAGGAGCAACAATGAGTTTGAGTACAATTACGTGGATGCGAATCTGGCGTCGGAGTTCCACAGCGCGAATCAGATGTCGCCGCTGCAAGATATCTTCATGTACCTCTCAAAGCCATTTTAA 813 0.5498 MAAPQLHFPPGFRFHPTDEELVVHYLCRKCLNQQIAVPIIAEIDLYKYDPWYLPGMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPIGKPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLAEVDRSVRRKNSLRLDDWVLCRIYNKKSAVEKQPPVKIECSELADEKPAIARPYAEVKVADCVNFEGSDSVPRLLTMDSSCSEQVVSPEPASEAQSEPKRSNNEFEYNYVDANLASEFHSANQMSPLQDIFMYLSKPF* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1376 270 PANTHER NAC TRANSCRIPTION FACTOR 56 1 251 - -
Vra6g1376 270 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 1 251 - -
Vra6g1376 270 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Vra6g1376 270 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Vra6g1376 270 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Vra6g1376 270 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1376 Vra-Chr6 27103801 27105380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1376 6 270 NAC Transcription Factor Family AT1G01720 69.825 1.97e-139 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g1376 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1376 - - pvu:PHAVU_001G072200g 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1376 6 27103801 27105380 Vra6g1376 6 27103801 27105380 ECH
Vra5g0832 5 14093886 14097639 Vra6g1376 6 27103801 27105380 PCT