Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1374 ATGTCAAAGTCTCCCTCTCATGAACCGCGACAGTCCATTTATTCTGGCTCTCTTCCTGGGGAATTTAATGAGGCAATGCGAATGGATGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAATTTGTCATCACCGGTTGAGAAAGAAACCGTTACAGCGCACTTACTAGGTATTGCCAGGAGAAGAAAGGATGCTAGAACACTCATAGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACACCTCTTGCAAAAGTTAATGTTGCTTCTACTCTGAGTGTCCTGTGCAAAGATGAAGAACTGAGGTTAAAAGTACTACTTGGTGGTTGTATCCCACCATTATTGTCACTTTTAAACTATGAATCCACTGAGACCAGGAAGGCAGCCGCTGAAGCAATATATGAAGTTTCCTCAGGTGGTCTGTCTGATGATCATGTTGGTATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACCTTATGGAGTCAACTAAATCCAAAGAACAAAGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATAGTGGGGCTCTTGTCTTCAGACAATTCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGTATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCCAAAAAATGACATTTCTGTTAGGGCTAGTGCTGCTGATGCCCTAGAAGCTCTCTCTTCAAAATCTACTGTGGCTAAAAAGGTCATCGTTAATGCAGATGGAATTCCAATCCTTATTGGAGCAATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTACAAGAGCATGCAACTCGAGCTTTAGCCAATATCTGCGGTGGCATGTCTGCATTAATACTATATCTTGGAGAACTTTCACGTTCTCCTCGGCTTGATGCTCCAGTTGGTGATATAATTGGGGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTAGGTGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGGAACAGCAAACTGATTCAAGAGTGTGTCCTTGAGGCTATGGCCAGCCTTTATGGAAACATCTGTCTCTCAAAGTGGCTCATTCAAGCTGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCAGTGACGTGCAAGAGTATCTGATACTTTCGTTGACAACCTTGTGTAGTGATAAGATTGGAGTATGGGAGGCCATTAAAAAGAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGCTGCTAGCAATCTTAACTGATCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCTCCACTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGACGCAGCAAATGTTCTGTGGAGTTTATGCTGTCACAGTGAAGATATTCGCGCTTGTGTTGAAAGTGCTGGAGCCATACCAGCATTTTTATGGCTTCTTAAGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCTATGGCACTAACAAAGCTTGTTCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTGCAGGATTCTCCAAGCTCGAAAGCCCACATAATTCGAGTTTTAGGTCATGTTCTTACTATGGCTTCACAGAATGATCTCCTTGAAAAAGGTTCTGCAGCTAACAAGGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCCAATGAGGAAACCCAAGAATATGCAGCTTCGGTTCTAGCTGATTTGTTTATCACAAGACAAGACATCTGTGATAGTCTTGCAACTGATGAGATTGTGCTTCCATGCATGAAGCTTTTGACTAGTAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCACTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCATCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTTCTGAGGCTCTGGCCGAAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGGTCCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCTGTAGGTGATGTTCTTAAGGGGAGTGCTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTTGTTAAAAGCTATGGATATGGACGGAACTGATGCTGCTGATGCTTTAGAAGTAATTGCATTGCTAGCCAGGACCAAGAAAGGTATCAGCAACAATTACTCTGCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCCTCCCTTGTGCAGGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCTGCTGTTCTTGGTGATTTGTTATCAACTAGTTCCAGAGCCATTGGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTCTAGAAGTAAAAATTGGAGGGTCTGCCTTGCTAATTTGTGCCGCTAAGCAGAAGAAAGAGCTTTCAATTGATTCACTTGACGCTTCTGGGCATCTGAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAAAGTTTTAAGTATTCTTCATTAGAAATTGAAGTTCTCGCTTCTAAAGGTTTTATGGAGAGAAATGGTTTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCTGCCACTGCCTTGGGAAGCACTATTGCGATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGTCCACAATTATGGAAGCTGGTGGACTTGAAGTTCTCTCGGACAAACTTGGAAGATATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTGTTGGCCATTTTATTTCAGGATACGAATGTTGTTCAGTCTCCAGTGACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCAATGGCCAGTCTTGTTTGTAATGGCAATAAGGGAATAGATCTTGCTATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATAATTGGGCATGTAGAGTCAGATATGCCTAATCTCATGGATTTATCAGAAGAATTTTCTTTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAGGTGGGTTCTACGGCCAGGAAATCTATACCACTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTTTTGATATCCATTGCAGATGGCAGTGATAGCAATAAATTAATCCTTGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAAGCTGCTATATCTGAGTTATTGAGAATATTATTTTGCAATTCTGATCTCATTAAACATGAAGCAGCAATCAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAACTGCTAGATACAGTGCAGCAAGAGCACTTCACGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAAGCTATTCAACCATTGGTTGATATGCTTAACACGACGTCAGGGCATGAACAGGAGGCTGCTCTCATGTCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTCTTACTGATATGGAAGGAAACCCTCTTAAATGTCTATACAAAATACTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCCCTTTTTGCCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCATAGAACCCCTTATATTACTGTTACAGTCTGGTTCTGAGACAGCAATAGAGTCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCGGCCTACAATATTGTGGATCTCCTTGTGAGCTTAGTTTCTGGTACTAACTATCAGCTTATTGAGGCTACCGTATCTGCTCTTATCAAATTGGGCAAAGATAGGACTACAAGTAAACTGGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGTTCCACAATATCTGAGCTCTTTCGCATTTTAACTAATAGTAGCGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACGTATGGGGACAGCATAGTGCATTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCCACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTAATTTCTTTTCTGGAATCCCCAACCCCAGCTATTCAGCAGCTTGGCACAGAACTATTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACTAAGAATGCAGTTGTGCCCCTTGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCTATAAAAGCATTGGAAAAAATTTCCACTAGTTGGCCAAAGGCTGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCGCATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACATTCCAATGCCGATTACTACTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAATACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGAGGCTCTGTTAGACCTGTTAAGATCTCATCATTGTGAAGAAGCATCTGGCAATTTATTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAGTATGCTATAGCGCCTTTGTCCCAGTATCTCTTGGATCCACAAACCAGATCACAGTCTGGTAAGCTTCTTGCTGCTTTAGCTTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGGGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTAGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAAGAATTGCTGCTGTCTCCAAACACAGAAGTTGCTGCACAAGCTGCTTTACTGATCAAATTTTTGTTTTCTACACATACACTGCAAGAATATGTATCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAAGCGGTTCTGAAGACTTTGCATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGTGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACATTTTGCTTGCTAAGACAATCATGGTCAACTATTCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCCGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGGTGTTTGACCGTCACAATCAAGCGTGGAAACAACCTCAGGCAAACTATGGGAAGCACTAACGCATTCTGCCGGTTAACAATAGGAAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCCGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACCATTCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCATCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATCTCCAATGATGACACTTGA 6408 0.4153 MSKSPSHEPRQSIYSGSLPGEFNEAMRMDDPESTMATVANFVEQLHANLSSPVEKETVTAHLLGIARRRKDARTLIGSHAQAMPLFINILRNGTPLAKVNVASTLSVLCKDEELRLKVLLGGCIPPLLSLLNYESTETRKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWSQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGPKNDISVRASAADALEALSSKSTVAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSPRLDAPVGDIIGALAYTLMVFEEKVGVDEKHFDATQIEDILVTLLKPRNSKLIQECVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAASDVQEYLILSLTTLCSDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREDAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLQDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIASEALAEDVVSALTRVLAEGSLEGKQNASRALHQLLKHFPVGDVLKGSAQCRFTVLALVDLLKAMDMDGTDAADALEVIALLARTKKGISNNYSAWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPAVLGDLLSTSSRAIGSLANRIMNSSSLEVKIGGSALLICAAKQKKELSIDSLDASGHLKPLIYSLVEMIKQSFKYSSLEIEVLASKGFMERNGFQEVDEFDIPDPATALGSTIAMWLLSVIASFHIKSKSTIMEAGGLEVLSDKLGRYTSNPQAEYEDTEGIWINALLLAILFQDTNVVQSPVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMDLSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEAAISSLNQLIAVLRLGSRTARYSAARALHELFDADNIRDSELAKQAIQPLVDMLNTTSGHEQEAALMSLIKLTSGNSSKVSLLTDMEGNPLKCLYKILSSASSLELKSHAAQLCFALFANSKIRADPVASECIEPLILLLQSGSETAIESGVCAFERLLEDEQQVELAAAYNIVDLLVSLVSGTNYQLIEATVSALIKLGKDRTTSKLDMVKAGIIDNCLKLLQLAPSSLCSTISELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNVWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPTPAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLENTISIALNALIVHDRSDASSAEQMMEAGVIEALLDLLRSHHCEEASGNLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEAVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTIPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLRQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDT* 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1374 2135 Gene3D - 860 1155 IPR011989 -
Vra6g1374 2135 CDD C2 2009 2099 - -
Vra6g1374 2135 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g1374 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Vra6g1374 2135 MobiDBLite consensus disorder prediction 1 18 - -
Vra6g1374 2135 Gene3D - 1589 1797 IPR011989 -
Vra6g1374 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 1584 1625 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 286 336 IPR000225 GO:0005515
Vra6g1374 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Vra6g1374 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Vra6g1374 2135 PANTHER - 20 2133 - -
Vra6g1374 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Vra6g1374 2135 Gene3D - 157 351 IPR011989 -
Vra6g1374 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 20 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vra6g1374 2135 SUPERFAMILY ARM repeat 1611 2005 IPR016024 -
Vra6g1374 2135 SUPERFAMILY ARM repeat 433 1124 IPR016024 -
Vra6g1374 2135 Pfam C2 domain 2008 2107 IPR000008 -
Vra6g1374 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Vra6g1374 2135 Gene3D - 365 626 IPR011989 -
Vra6g1374 2135 Gene3D C2 domain 2007 2133 IPR035892 -
Vra6g1374 2135 Gene3D - 627 839 IPR011989 -
Vra6g1374 2135 Gene3D - 1798 2005 IPR011989 -
Vra6g1374 2135 Gene3D - 1167 1418 IPR011989 -
Vra6g1374 2135 SMART C2_3c 2008 2104 IPR000008 -
Vra6g1374 2135 SUPERFAMILY ARM repeat 1191 1624 IPR016024 -
Vra6g1374 2135 Gene3D - 27 156 IPR011989 -
Vra6g1374 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Vra6g1374 2135 Gene3D - 1419 1588 IPR011989 -
Vra6g1374 2135 SUPERFAMILY ARM repeat 72 309 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1374 Vra-Chr6 27058983 27069952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1374 373 789 U-box Gene Family AT3G46510 22.398 2.84e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1374 - - gmx:100796864 3790.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1374 6 27058983 27069952 Vra6g1374 6 27058983 27069952 ECH