Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1365 ATGAATCACCTACCTCGACTATTCGGCAATAGAAAAAAGCCTCCAAACATGGAACCCAAGAAGAGCAAGACGCGAGGCAAGAAGCAGCAGCCCAAGCTCGAGCGCCGCAACGCCGCCAAGCACTTCGAATACGACGCCGGATCGTCGTCTTCTTTGCGAGGTGACTCCGCATCCGTCTCCACGTCGTCTTCCTCGTCGTCTTCGTTATATACGCGCTCAATGGACTTTTACGGCCATCGGAGCTTCCGAATCGATGGCGTGGAGGGCGAGTTCGACCGGATTTGCCAAAGCCTCGGCCTCTCCGGCCCGGAGGACTTCTCCATTCCGACCGCCGCCTGGGAGGCCATGAAGCTCCGTTCCTCCTCCGACATCCCGTTGCTCCGGAACCACGACGGGAAGGCGTTCGACGAGGAGGCGAAGGAGAAGGAGGAAATTGAAGCGGTTGAGAGCGAGGATGAGGCTAGGGTTTTGGATGAGTGTGTTGTTCCTGCTGAGAGCAGTGGTTGCTGCACCGCTGGCGGCGGAGGAATTAAGGGTTTTCGGCCTCCGATGCTGAAGCCGCCGCCAGGGATTAGGGTTTCGGTGGTGGACGAAACGTGTTCGACATGGGATTTGTTGCGGGATTTTGCGCCGAAAGGGGAGGGAGGGAAGGAGACTTACGTGGAGTTGAGTGCTTCTGATGAAGATGAGGACGGAGAAGAAAAGGAAGAGGAGGATGAGGAAGAAGGGGAAGTTGGTGGAGTTAGGGTGGAGAGAGAAGAGGAGGAAAACGCGGAGAGGATTGCGGATATTGTGGATGAGTTTTCTGGGTTTTCTACTTCGAACGAAGATGACTCTTCTAGCACTACTACGGGTCCTAATTCTAGTAATATATCTCCTAATGGGAGAATCAAGCGTGTGATTACCGCGGGTAACTGGCAGAAGGGTGAGCTTTTGGGGCGTGGCTCGTTTGGCTATGTCTATGAAGGGATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTACTTGATCAGGGGAATCAGGGAAGGCAAAGTGTATATCAACTGGAACAGGAAATTGCACTTTTGAGTCAATTTGAACACGAGAATATAGTTCAATACTTTGGCACTGAAATGGATGCGTCAAATCTGTATATCTTTATTGAGCTTGTAACTAAAGGTTCCCTTAGAAATCTCTACCAGAGATATACTCTTCGAGATTCTCAAGTATCTGCTTATACAAGGCAGATTTTGCATGGTTTAAAGTATCTCCATGATCGGAACATCGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCGAATGGATCTGTCAAGCTTTCAGATTTTGGATTGGCGAAGGCCATCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGGTTGTGAAAGGTAAACAAAAAGGTTACGGGCTTCCAGCTGATATATGGAGTCTTGGATGTACTGTGTTAGAGATGTTAACCGGCCAATTTCCATACTCTCACTTAGAATGTATGCAGGCATTGTTTAGAATTGGAAGAGGCGAGCCCCCAATTGTGCCAGATTCCCTTTCAAGAGATGCACAGGATTTTATCCTGCAGTGTCTCAAAGTTAATCCAGATGAACGTCCCAGTGCTGCTAAACTCCTAAACCATACCTTTGTTCAAAGGCCGCTACTTTCCCAGACCTCTGGTTCTGCATCTCCTTATATTCGAAGGGGTTAA 1737 0.4853 MNHLPRLFGNRKKPPNMEPKKSKTRGKKQQPKLERRNAAKHFEYDAGSSSSLRGDSASVSTSSSSSSSLYTRSMDFYGHRSFRIDGVEGEFDRICQSLGLSGPEDFSIPTAAWEAMKLRSSSDIPLLRNHDGKAFDEEAKEKEEIEAVESEDEARVLDECVVPAESSGCCTAGGGGIKGFRPPMLKPPPGIRVSVVDETCSTWDLLRDFAPKGEGGKETYVELSASDEDEDGEEKEEEDEEEGEVGGVRVEREEEENAERIADIVDEFSGFSTSNEDDSSSTTTGPNSSNISPNGRIKRVITAGNWQKGELLGRGSFGYVYEGISEDGFFFAVKQVSLLDQGNQGRQSVYQLEQEIALLSQFEHENIVQYFGTEMDASNLYIFIELVTKGSLRNLYQRYTLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKLSDFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKQKGYGLPADIWSLGCTVLEMLTGQFPYSHLECMQALFRIGRGEPPIVPDSLSRDAQDFILQCLKVNPDERPSAAKLLNHTFVQRPLLSQTSGSASPYIRRG* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1365 578 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 77 572 - -
Vra6g1365 578 MobiDBLite consensus disorder prediction 245 263 - -
Vra6g1365 578 ProSiteProfiles Protein kinase domain profile. 306 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1365 578 MobiDBLite consensus disorder prediction 49 70 - -
Vra6g1365 578 MobiDBLite consensus disorder prediction 224 244 - -
Vra6g1365 578 MobiDBLite consensus disorder prediction 1 70 - -
Vra6g1365 578 Gene3D Transferase(Phosphotransferase) domain 1 303 574 - -
Vra6g1365 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vra6g1365 578 Pfam Protein kinase domain 307 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1365 578 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 77 572 - -
Vra6g1365 578 MobiDBLite consensus disorder prediction 268 295 - -
Vra6g1365 578 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vra6g1365 578 SMART serkin_6 306 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1365 578 MobiDBLite consensus disorder prediction 223 295 - -
Vra6g1365 578 SUPERFAMILY Protein kinase-like (PK-like) 289 565 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1365 Vra-Chr6 26793677 26806249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1365 32 563 MAP Kinase Kinase Kinase AT4G08500 52.551 2.23e-172 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra6g1365 Pkinase 1.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1365 K13414 - gmx:100804388 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1365 6 26793677 26806249 Vra5g1265 5 19462006 19469399 PCT