Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1364 ATGGCGGCTTTCGTTGACAACCGTCAATTCGGCACTCACATGAACGGCGTCGTTCGCAGTTGCGGGCAGGACCTAAAGCCCTCTCTGCCGTTGGATTTCGATCTGGACTCCTCCGGCAGCGACGAGGATGAAAACGATGACGCTTCGTACCTGAAAGAGCTCATACGAAAAGCGAACTCGGAAACGGAGGCGTCGGTTATGGACCCACGCGACGAGGGAACGGCGGATCAGTGGGTCGCACGGAACGCCTCCATGATCCGCCTCACAGGGAAGCACCCGTTCAACGCCGAATCCCCCTTGCCGCGTCTCATGCACCACGGCTTCATCACACCGGTCCCGCTCCACTACGTCCGCAACCACGGTCCAGTTCCCAAGGCCAAGTGGGAAGACTGGACCGTTGAGATAACCGGTCTAGTAAAACGCCCAACCCGGTTCACCATGGAACGCCTCGTGCGCGAGTTCCCCCACCGCGAGTTCCCCGCCACACTCGTCTGCGCCGGGAACCGCCGCAAGGAGCAGAACATGGTCAAGAAGACCATCGGCTTCAACTGGGGCTCCGCCGGCACCTCCACCTCCGTGTGGCGCGGCGTGCCGCTGCGTCACGTGCTACGCCGCTGCGGGATCCTTACACGTGCGAAGGGCGCGCTTCATGTGTGCTTCGAGGGCGCCGAGAATCTCCCCGGCGGCGGCGGATCGAAGTACGGAACGAGCATCTCGAGGGAGATGGCCATGGACCCCTCGCGCGACATTATCCTTGCTTACATGCAAAACGGCGAGCCTCTGGCACCGGATCATGGCTTCCCCGTTCGCATGATTATTCCGGGATTTATCGGTGGCAGAATGGTGAAGTGGCTCAAACGCATTGTTGTTACTGAACTTGAGTGCGACAATCATTATCATTACAAGGATAACAGAGTGCTCCCTTCCCATGTTAGTCCAGAACTTGCCAATGAAGAAGGTTGGTGGTACAGACCAGAGTACATAATCAACGAGTTGAATATAAACTCAGTGATAACGACTCCGTGTCACGATGAAATTTTGCCCATCAACTCATGGACAACGCAGAGGCCTTACGTAGTCAGAGGCTACGCTTATTCTGGTGGTGGGAGGAAAGTGACACGTGTGGAGGTAACACTGGACGGTGGAGAAACGTGGCACGTGTGCACACTGGAGCATCCTGAGAAACCTAATAAATATGGGAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAAGTGGAGGTGTTGGACCTGCTGGGGACCAAAGAGATTGCAGTTCGAGCTTGGGATGAAGGTCTCAACACACAGCCAGAAAACCTAATTTGGAATCTTATGGGCATGATGAACAACTGTTGGTTCAGAGTGAAGACAAATGTGTGCAAGCCCCACAAGGGTGAGATTGGAATGGTGTTTGAACACCCAACCCAACCAGGGAACCAACCTGGTGGATGGATGGCCAAGGAAAAGCACTTGGAGACATCACAAGAGCCTAAACCAAGCCTCAAAAAGAGTGTATCTACGCCATTCATGAACACCAATTCAAAAATGTTTTCCATCTCCCAAGTTAAAAATCATAGCAGCCCTGAATCCGCTTGGATCATCGTCCACGGTCACGTCTACGATTGCACTCGCTTCCTCAAAGATCACCCTGGTGGCACCGACAGCATCCTCATCAATGCCGGCACTGACTGCACCGAAGAGTTTGACGCCATCCACTCTGACAAAGCAAAGAAGATGCTCGAAGATTATCGAATTGGCGAGCTCATCACTACAGGTTACACTTCAGACTCATCGCCGAACAACTCCGTGCATGGAAATTCCGAATTCACCCATTTGGCTCCCATCAAGGAAATCACCACAAAACCACCACTACCACCACGCAGTGTCGCTCTCAACCCACGTGAGAAAATCCCATGCAAACTCGTGTCAAAAACCGCCATTTCCCACGACGTGAGGCTTTTCCGTTTTGCACTGCCCTCAGAGAACCAACTCCTAGGTTTACCAGTGGGTAAGCATATTTTCTTGTGCGCCACCATAGATGGAAAGCTATGCATGCGAGCCTACACTCCGACAAGCGGCGTGGATGAAGTGGGGTTCTTCGATTTGCTCATCAAGGTTTACTTCAAAGGCGTGCACCCCAAGTTCCCGAACGGAGGACTTATGTCACAGCATTTGGACTCTCTCTCCATTGGGTCCATGTTGGACGTGAAGGGTCCAGTGGGTCACATAGAGTACACTGGCAGAGGCAACTTCACGGTTCATGGGAAACCTAGATCCGCAAAGAGGTTAGCCATGCTGGCTGGTGGAACCGGGATCACACCAATCTACCAAGTGGCGCAAGCGATTCTGAAAGACCCAGAGGACCTCACCGAAATGCATGTGGTGTATGCAAACCGAACAGAGGATGACATTCTTCTGAGGGAGGAGTTGGATGCATGGGCGAAGGAACACAGTGAGCGGTTCAAGGTGTGGTACGTTGTGGAAACCGCGAAGGAAGGGTGGGAATACAGTGTGGGGTTCATCACAGAAACTATCATGAGGGAGCATCTTCCAGAAGCTTCTAGGGATTCCTTGGCTTTGACGTGTGGACCACCACCCATGATTCAGTTCGCGGTGCAGCCCAATTTGGAGAAGATGGGGTACGATATCAAGAATGATTTGCTCGTGTTTTAG 2670 0.5296 MAAFVDNRQFGTHMNGVVRSCGQDLKPSLPLDFDLDSSGSDEDENDDASYLKELIRKANSETEASVMDPRDEGTADQWVARNASMIRLTGKHPFNAESPLPRLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVEITGLVKRPTRFTMERLVREFPHREFPATLVCAGNRRKEQNMVKKTIGFNWGSAGTSTSVWRGVPLRHVLRRCGILTRAKGALHVCFEGAENLPGGGGSKYGTSISREMAMDPSRDIILAYMQNGEPLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTELECDNHYHYKDNRVLPSHVSPELANEEGWWYRPEYIINELNINSVITTPCHDEILPINSWTTQRPYVVRGYAYSGGGRKVTRVEVTLDGGETWHVCTLEHPEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENLIWNLMGMMNNCWFRVKTNVCKPHKGEIGMVFEHPTQPGNQPGGWMAKEKHLETSQEPKPSLKKSVSTPFMNTNSKMFSISQVKNHSSPESAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSDSSPNNSVHGNSEFTHLAPIKEITTKPPLPPRSVALNPREKIPCKLVSKTAISHDVRLFRFALPSENQLLGLPVGKHIFLCATIDGKLCMRAYTPTSGVDEVGFFDLLIKVYFKGVHPKFPNGGLMSQHLDSLSIGSMLDVKGPVGHIEYTGRGNFTVHGKPRSAKRLAMLAGGTGITPIYQVAQAILKDPEDLTEMHVVYANRTEDDILLREELDAWAKEHSERFKVWYVVETAKEGWEYSVGFITETIMREHLPEASRDSLALTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1364 889 PANTHER NITRATE REDUCTASE 47 889 - -
Vra6g1364 889 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 733 883 IPR039261 -
Vra6g1364 889 PRINTS Cytochrome B5 reductase signature 664 675 - -
Vra6g1364 889 PRINTS Cytochrome B5 reductase signature 685 692 - -
Vra6g1364 889 PRINTS Cytochrome B5 reductase signature 730 744 - -
Vra6g1364 889 PRINTS Cytochrome B5 reductase signature 763 782 - -
Vra6g1364 889 PRINTS Cytochrome B5 reductase signature 801 812 - -
Vra6g1364 889 PRINTS Cytochrome B5 reductase signature 857 865 - -
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 547 557 IPR001709 GO:0016491
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 685 692 IPR001709 GO:0016491
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 763 782 IPR001709 GO:0016491
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 789 798 IPR001709 GO:0016491
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 801 812 IPR001709 GO:0016491
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 833 849 IPR001709 GO:0016491
Vra6g1364 889 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 857 865 IPR001709 GO:0016491
Vra6g1364 889 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 512 592 IPR036400 -
Vra6g1364 889 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 137 172 IPR022407 GO:0043546
Vra6g1364 889 Pfam Oxidoreductase FAD-binding domain 638 744 IPR008333 -
Vra6g1364 889 CDD eukary_NR_Moco 71 456 - -
Vra6g1364 889 PIRSF Nitr_rd_NADH 12 888 IPR012137 GO:0006809|GO:0042128|GO:0050464
Vra6g1364 889 Pfam Cytochrome b5-like Heme/Steroid binding domain 519 587 IPR001199 -
Vra6g1364 889 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 513 588 IPR001199 -
Vra6g1364 889 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 68 329 IPR036374 -
Vra6g1364 889 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 544 551 IPR018506 GO:0020037
Vra6g1364 889 PRINTS Cytochrome B5 signature 538 548 IPR001199 -
Vra6g1364 889 PRINTS Cytochrome B5 signature 548 562 IPR001199 -
Vra6g1364 889 PRINTS Cytochrome B5 signature 563 570 IPR001199 -
Vra6g1364 889 PRINTS Cytochrome B5 signature 575 587 IPR001199 -
Vra6g1364 889 Gene3D - 509 590 IPR036400 -
Vra6g1364 889 Gene3D - 331 505 - -
Vra6g1364 889 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 633 745 IPR017927 GO:0016491
Vra6g1364 889 PANTHER NADH-CYTOCHROME B5 REDUCTASE 47 889 IPR001834 GO:0016491
Vra6g1364 889 Gene3D - 70 320 IPR036374 -
Vra6g1364 889 Gene3D Translation factors 626 739 - -
Vra6g1364 889 Pfam Mo-co oxidoreductase dimerisation domain 327 458 IPR005066 GO:0016491|GO:0030151
Vra6g1364 889 Pfam Oxidoreductase NAD-binding domain 764 871 IPR001433 GO:0016491
Vra6g1364 889 Gene3D - 740 889 IPR039261 -
Vra6g1364 889 CDD cyt_b5_reduct_like 638 889 - -
Vra6g1364 889 Pfam Oxidoreductase molybdopterin binding domain 120 299 IPR000572 -
Vra6g1364 889 SUPERFAMILY E set domains 331 458 IPR014756 -
Vra6g1364 889 SUPERFAMILY Riboflavin synthase domain-like 626 745 IPR017938 -
Vra6g1364 889 SMART Cyt_b5_2 516 588 IPR001199 -
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 86 100 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 108 124 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 161 172 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 172 184 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 187 202 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 245 261 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 262 275 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 329 341 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 360 374 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 374 386 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 401 411 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Vra6g1364 889 PRINTS Eukaryotic molybdopterin domain signature 439 452 IPR008335 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1364 Vra-Chr6 26695997 26700544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1364 626 880 NADPH P450 reductases AT5G17770 41.245 9.92e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1364 K10534 - gmx:100813471 1665.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1364 6 26695997 26700544 Vra6g1364 6 26695997 26700544 ECH