Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1348 ATGGAAGAGAACCCTAACTTCTCTCTCACTCGCGATTCTTCCCTTTCCTCTCCGGAATTCTTCAAACAAGTCCAAGCTGCTCTCAAGCGCCATCGCCCTCTCGCCGTTAATGCCTCTTCAGCTTCAACCCAATCGCATGCCCTGAGGCCAAAGCGCTCCATGGTGGCGCACCGAAACGTCGCCAACAGGTCCGAAGGGGAACCTCCGTCCATTTCGGACACGTTCACCGGTGAAGGTTGTAAGAACGAACCCTCTCTGCCCGTGGAATCTCATAGTGTTGGTGCGCACAAGAAGGTTCGTTTTTCAACTGAGAGCAACAATGCCACTTCACAGCCGCAGGATGGGGCATCAATTGGATTCAATCAACATGTGAAACACCACAATATGCAGCAGGCAGAGTCTGAGGCTAGTTTGTTATCCGAGGGAGGCAAGAGTTCTCTGCTTCCAAGGAGAAGAATAGTTACTGAGGATCATCTCCAGCAATTCAAAAACTTTTTGAGTCAACCAGCTACACTATCTTCCGTAGTGGGATTGCCATGCCCTACAACTACATCAGTCCATTCAACTTCAGCTCCAATGCCGAATTCTATAACTCATTGTGCCAATTCCTGTATGGATAGTGACTCGCATGTGGCTGCAGAACCTTGTGATAACCTGAATGTCAATCCTCATCCTATAACACAAGGGGCTGTTAAATCACCATATAATTCTCGGAAAGACACCAATAGGATGTCAGTTGATCAGGTGGCAAGTGCAGTTCAAGAATATAATTCACTAAATGAAGCAGAGTTGACATTTAAGCACCGTGACCCATCTAAGGAGCAACAAGGATGTTTGCTAAAGGAAACTAGTAAATATACTTCTTGTTGTAATGACATGTTAAGTAACGTGGACGAGCCTGCAGCTGTTACCAACATACTGCCTCAGGGTCTGACTATATCTTCAGATACGAAGCTGGAATCTTCTAGGTTAGAAAAGCAAGAAAAAAATGCAAGTTGTAAAGGACCTTCAGTCGCTCGAAAGAGGACCTATGACCCCGAGTTGTTTTTTAAAGTCAACGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGAAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATTTCATCAGACTGTACTATCTACGCACTTAAAAGAATAAAACTAAAGGGTCGTGATTATGCCACAGCATACAGCTTTTGTCAGGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATGAATGGCTCCAGTAGTAAAGATGGTAGAGTCAAGGATGATGGATACATATACATGGTGCTTGAATATGGGGAAATTGATCTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTAGATGGGAACAACCAGACTATAGATGCGAATTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAGGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCATTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTTGGTACTCTAAGTTACATGTCTCCAGAAGCATTTATGTGCAATGAGAGTGATGCGAGTGGAAGCATCATGAAGTGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCCTTTTCAGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCCAATCACGAAATTATGTACGAACCGGTTTCAAATCCTTGGCTTCTTGATCTTATGAAAAAGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGTTGCTCCAGCATCCTTTTCTAGTTCCCCCATGTCATCAATCTTTGTTCCAGGATCAAACCTTTAAATTGCTGCAACTTATAGCTGAAACCTGCAAAAATGACCCAGAAGCATCGCAGCTCTGTTTTCAACTTCAACAGGTGCTTGATAATCCCATAAAATTAACCAGTACTCATTCATTAAACTCCCTAGACCAACAGCATAAATTGCTGTCCCGAATATCAGAACTTTGTATTCAACTACGGAAACGCTTTCCAAATTCGGATGAAGAATAG 2199 0.4293 MEENPNFSLTRDSSLSSPEFFKQVQAALKRHRPLAVNASSASTQSHALRPKRSMVAHRNVANRSEGEPPSISDTFTGEGCKNEPSLPVESHSVGAHKKVRFSTESNNATSQPQDGASIGFNQHVKHHNMQQAESEASLLSEGGKSSLLPRRRIVTEDHLQQFKNFLSQPATLSSVVGLPCPTTTSVHSTSAPMPNSITHCANSCMDSDSHVAAEPCDNLNVNPHPITQGAVKSPYNSRKDTNRMSVDQVASAVQEYNSLNEAELTFKHRDPSKEQQGCLLKETSKYTSCCNDMLSNVDEPAAVTNILPQGLTISSDTKLESSRLEKQEKNASCKGPSVARKRTYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYSFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVMNGSSSKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGNNQTIDANWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGSIMKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEIMYEPVSNPWLLDLMKKCLAWDRNERWRIPQLLQHPFLVPPCHQSLFQDQTFKLLQLIAETCKNDPEASQLCFQLQQVLDNPIKLTSTHSLNSLDQQHKLLSRISELCIQLRKRFPNSDEE* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1348 732 ProSiteProfiles Protein kinase domain profile. 357 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1348 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Vra6g1348 732 PANTHER MIXED LINEAGE PROTEIN KINASE 10 700 - -
Vra6g1348 732 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 10 700 IPR027084 GO:0004712|GO:0007093|GO:0051304
Vra6g1348 732 MobiDBLite consensus disorder prediction 65 79 - -
Vra6g1348 732 MobiDBLite consensus disorder prediction 61 93 - -
Vra6g1348 732 CDD PKc_Mps1 355 649 - -
Vra6g1348 732 SMART serkin_6 357 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1348 732 Gene3D Phosphorylase Kinase; domain 1 350 437 - -
Vra6g1348 732 SUPERFAMILY Protein kinase-like (PK-like) 351 658 IPR011009 -
Vra6g1348 732 Pfam Protein kinase domain 357 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1348 732 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vra6g1348 732 Gene3D Transferase(Phosphotransferase) domain 1 470 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1348 Vra-Chr6 26270087 26287307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1348 323 650 MAP Kinase Kinase Kinase AT4G08470 29.226 7.70e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vra6g1348 Pkinase 6.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1348 K08866 - gmx:100816674 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1348 6 26270087 26287307 Vra6g1348 6 26270087 26287307 ECH