Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1335 ATGGCGAGCTTACTAAGCTCTTCTTCACCCATAGACGCAATCATGGACGACCCTGATTTCCTCGACTTCTCCAAACGCAGCATCACCACCAGTTCTTCCTCCGAGGAAGACTGGACCAACCTTTGGTCCCCTCTCATCGACTGGGGATCCCTCGCCGCCGGTGAAGACAATTTTCAAATCCTCATTGACTCCATCGCCCATGAGCACGACGTCGTTTTGACCCCTGATCAAACCACAGCCCAAGACCCCGACTTAAGTAGCCACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCCCCGGCACCGAGAGCCACCACCTGGCTCGAGTGATATTGGTTCGGCTCAACGAGTTGGTGTCCACCACCCACGGCACCAACATCGAAAGACTCGCGGCGCACTTTAGCAGCGCGCTGCAAAATCTGCTAGATGGCGCCGGGAGTGCGCACAGCATAACCACCGACACCCCCAATCCCACGGACACGCTCACCGCGTTTCACCTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCATTTCACCGCCAACCAGGCCATCTTAGAGGCCGTAGCTCACGAAAAACGGGTCCACATCGTCGACTTCGACGTGACCGAAGGAGCCCAATGGGCATCCCTAATGCAGTCCCTCTCGTCAAGAAGCACCGGCCCACCTGGCCCACACCTCCGCATTACCGCATTGTCCAGAGGCTCCACCTCTGGACGGAGATCCATCGCCACCATTCAGGAAACTGGACGGAGGCTAACGGCGTTCGCGGCATCCGTGGGGCAACCGTTTTCTTTTCATCAATGTCGGTTGGACCCTGAGGAAACGTTTCGACCTTCGTCACTGAAACTGATTCGCGGCGAGGCCTTGGTCTTTAACTGCATGCTGCACTTGCCGCACCTGAGCTTCCGAGCCTCAGGTTCGGTTGCTTCGTTTCTGAAAGGTGCGAAGGAATTGAACCCGAGGGTTGTAATGGTGGTAGAGGAAGAGGTGGCGCGAGGTGGAGATGCGGGCTTTGTGGGCCTGTTTATGGATTCGCTGCAGCACTACTCGGCGGTGTTTGATTCGCTGGAGGTTGGGTTTCCCATGCAGAAATGGGCCCAGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCAAGAATAGCAAATTCTGTGAGCCTTATGTACCGGAGTGGAGGTGAGGACAGAGGATCGTGGGAAGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCAGTAAGCTTCGCTAATCACTGCCAAGCGAATCTGTTATTAGGATTGTTTAACGATGGATATAGAGTAGAGGAGATGGGGAACAATAAATTGGTATTGGGTTGGAAATCACGCCGTTTGATATCAGCCTCTGTTTGGACTTCAAACTCTTGA 1410 0.5567 MASLLSSSSPIDAIMDDPDFLDFSKRSITTSSSSEEDWTNLWSPLIDWGSLAAGEDNFQILIDSIAHEHDVVLTPDQTTAQDPDLSSHDEKGLRLVHLLMAAAEALTPGTESHHLARVILVRLNELVSTTHGTNIERLAAHFSSALQNLLDGAGSAHSITTDTPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPGPHLRITALSRGSTSGRRSIATIQETGRRLTAFAASVGQPFSFHQCRLDPEETFRPSSLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVMVVEEEVARGGDAGFVGLFMDSLQHYSAVFDSLEVGFPMQKWAQALVERVFLGPRIANSVSLMYRSGGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEEMGNNKLVLGWKSRRLISASVWTSNS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1335 469 ProSiteProfiles GRAS family profile. 86 466 IPR005202 -
Vra6g1335 469 Pfam GRAS domain family 95 466 IPR005202 -
Vra6g1335 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 466 IPR005202 -
Vra6g1335 469 PANTHER SCARECROW-LIKE PROTEIN 26 76 466 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1335 Vra-Chr6 25958220 25959918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1335 85 465 GRAS Transcription Factor Family AT3G03450 35.338 2.43e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra6g1335 GRAS 2.9e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1335 - - pvu:PHAVU_008G165200g 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1335 6 25958220 25959918 Vra6g1335 6 25958220 25959918 ECH