Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1334 ATGCCACTGAACCGTGGCCAAAGCCAAACCACAAGGTGGTATCATCAGCTATGCTTTGTTCCCACTAGTTCAGATAGTTCAGATGACTCGGACGTAGAATCTGTAATCATTACACCAACTACTACAATTACAACTAGTACCACATGGCAAGAACTTTCTCCGCCGCTGTCACCACTGCCACCACTACCGCCACCACCACCACCACCAGTTCCTGAACCTCAAATGGATTGGCGCTTTCCACTACCACCGCCACCACCAGATTTTGTGCGGCCACTGCTGCTGCAACAGCATGAGCCTGATCTCAGTGGGGTTTGGGCTATTCTTAACGAAGAAGTACAGCAGGATAGGCTTCAATCTCCCAATATAAGTCATGTGTTTAAAGATGATAAAAGTGGGTGCTCAACGATTGCCATGAATGGCCTTAGCAGGGTAAGAGTATCAGACACAGATAAAATCTTTCTCTGTCCCATTTGCATGGATCAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCACCCACACCTATTGTTCCGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAATGGTTATAGTTTTGATAGCATAGATGATAATAATAATAATTTGAACTCGCATGTTGAATTTCTATCAACATCATTGTCTTCACCACCATCGCCATACTTTCGTTCTCCTCCGCGCCCGGAGTACCTCGTAGAATCTTCTCTCAACCTTACAGCAGGTGTAGAGAACAGTGCAAGTGATAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTAGGTGATTCTCAAGAAAATGGTGCTTCTCATACTGCTAATGATTTATTACAGTAA 873 0.4422 MPLNRGQSQTTRWYHQLCFVPTSSDSSDDSDVESVIITPTTTITTSTTWQELSPPLSPLPPLPPPPPPPVPEPQMDWRFPLPPPPPDFVRPLLLQQHEPDLSGVWAILNEEVQQDRLQSPNISHVFKDDKSGCSTIAMNGLSRVRVSDTDKIFLCPICMDQFKVCDQAYRLPCTHTYCSECILRWLNSSKTCPVCRLQLNGYSFDSIDDNNNNLNSHVEFLSTSLSSPPSPYFRSPPRPEYLVESSLNLTAGVENSASDNSDEADYDSACDELGDSQENGASHTANDLLQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1334 290 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Vra6g1334 290 MobiDBLite consensus disorder prediction 275 290 - -
Vra6g1334 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF181 117 205 - -
Vra6g1334 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 205 - -
Vra6g1334 290 MobiDBLite consensus disorder prediction 43 73 - -
Vra6g1334 290 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Vra6g1334 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 230 IPR013083 -
Vra6g1334 290 SUPERFAMILY RING/U-box 154 199 - -
Vra6g1334 290 Pfam Ring finger domain 155 196 IPR001841 -
Vra6g1334 290 MobiDBLite consensus disorder prediction 252 290 - -
Vra6g1334 290 MobiDBLite consensus disorder prediction 54 73 - -
Vra6g1334 290 SMART ring_2 155 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1334 Vra-Chr6 25928147 25929262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1334 137 211 C3H Transcription Factor Family AT1G68180 37.179 1.73e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1334 - K11982 pvu:PHAVU_008G165100g 315.464