Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1333 ATGGTTAAGCCAGAGAAGAAGATCAACAACACAGAATCATCAAAGGCATTATTGAGAGCAGTATCTTCCTCATCAGCAGCAGCAGCAGCATCAAGTGAGAACAAGAAGAAGTTCAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTTTCAGAGATTAGAGCACCAAACCAAAAAACTAGAATATGGTTGGGATCTTATTCAACTGCTGAGGCAGCAGCAAGAGCCTATGATGCTGCACTACTTTGCCTTAAAGGCTCCTCAGCCAACCTCAACTTCCCTTCAAGCTCCTCCTCACACTACATTCCTCAAGACACTGTCATGTCCCCAAAATCAATCCAAAGAGTGGCTGCAGCTGCTGCCAACAACTTTTTAGACACTGCCATTGCTACCACCCCATCTTCTCCTCCTCTTGCTTCAACCTCTTCCTCTTCATTCGTCTCATCCCCATCAATCTCATCATCTCCCTCAGACCAAATTGACGATGATGTCTCACTTCTGTCACCTCCTCCACCTTCAGTTAACTCTGATCAAGCAAATGAATCAATGGCTATGATGGAATATTGGTATGACTTGGAGGCGTTACAATCACCAAAGTATGTTGAGCAAATGCTAAGTGGGGCATTTTTTGACATTGATTCCACACACTTGTTTGATGATCTGTATGAAGAAAGTGACATTAGTTTGTGGAGTTTCTGCTGA 702 0.4416 MVKPEKKINNTESSKALLRAVSSSSAAAAASSENKKKFKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSHYIPQDTVMSPKSIQRVAAAAANNFLDTAIATTPSSPPLASTSSSSFVSSPSISSSPSDQIDDDVSLLSPPPPSVNSDQANESMAMMEYWYDLEALQSPKYVEQMLSGAFFDIDSTHLFDDLYEESDISLWSFC* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1333 233 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Vra6g1333 233 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vra6g1333 233 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vra6g1333 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 23 233 - -
Vra6g1333 233 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vra6g1333 233 MobiDBLite consensus disorder prediction 133 162 - -
Vra6g1333 233 MobiDBLite consensus disorder prediction 133 178 - -
Vra6g1333 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 233 - -
Vra6g1333 233 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Vra6g1333 233 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Vra6g1333 233 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vra6g1333 233 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1333 Vra-Chr6 25908036 25909410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1333 1 232 AP2-EREBP Transcription Factor Family AT1G21910 45.276 5.05e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra6g1333 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1333 - - gmx:100813313 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1333 6 25908036 25909410 Vra6g1333 6 25908036 25909410 ECH