Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1330 ATGGAGAGAGCGTTGCAGTGGATTGTGGTTGTAGCAATATGTGCTTCATCCACCTTAATTCGTGCAGCAGGAATCGATGAAACTCCTCACAGAAAGCTTTCCAATGTTGATTATTCAGTTGATGCGATCAAACGCATCAAAGACATCTATAAGATCTCCAGAATGAAGTGGCAAGGAGACCCCTGCGGACCACAAGTATTTACATGGGATGGTCTGACTTGCAATGCTAGGAATCCTCCAAGAATCATCTCATTAAACCTGAGTTCAAGTAAATTATCGGGCAACATAGATGTGTCATTCTCCAACCTTGCAAATTTAGAGATTTTAGATCTGTCAAACAATCAATTGGTGGGAGAGGTGCCAGAATTCTTAGCCAAGTTATCGCAGTTGAAGATACTTAACTTGTCCAGGAATAGTCTCACAGGTCCCATTCCTGATGCCCTCATAGCAAAGTCAAAGAGTAATTCTTTACAATTGAGTTTGGAGGGGAATACTGATATATGTCAGATAGGATCATGCAAGAAGAAGAAGAATATTGTTCGATTAGTCGCAAGTAATGTAGCATCAATTGTTGTCTCTATCATAATAGTAGGCATAATTATGATTTGGAGATCACATAGAAAAAATGAAGGAGGGATATCTTCAACTTCAAGAAAAGATAAACTAAAATTAAAAAATCAAACATTTTCTTACTCGGAGATTCATAATATTACCAACGGTTTCGAAACAATGATTGGAAAAGGTGGATTTGGTGAAGTTTACTTAGGCACTTTGCAAAGTGGTGAACGAGTTGCTGTAAAGAAACTCTCTATGTCATCAAAGCAAGGTTACAAGGAGTTTAAGTCAGAGGCAAAGTTTCTAACGCTTGTTCATCATAGAAATGTGGTTTCTCTTGTGGGGTATTGTGATGAAGATGATGCCAAAGCACTTATTTACGAATATCTATCAAAAGGAAACCTCCAAGAACATCTGTCAGAAAAGCTCAAATGTCTTGGATGGAAAGAGAGAGTTCAAATTGCCTTAGATGCAGCAAGTGGATTGGATTATTTGCATAATGGATGTAAGCCACCTATAATTCATAGAGATTTGAAAGGTTCCAACATCCTACTAGATGAAAATATGCATGCCAAGATTTCAGATTTTGGATTGTCTAGAACTTTTGCGAATGACAATGACACTCATGTCTTAACTAATTACCCAGGTGGCACACCAGGTTACCTTGATCCTGAGTTTCACTCCTCGGGTACCCTTAATAAAAGAAGTGACGTTTACAGTTTTGGAGTAATTTTGTTAGAGCTAATTACAGGTCAACCAGCAATAAGAGGAACTCCTGATAAACCTAGTCACATACATACTTGGGTTAAACAAAAACTTGAAGCTGGAGACATTCAAGCAATAGTTGATCCAAGATTAGAAGGAAATTACCATGTTGCTTCAGCTTGGAAATTTTTGGATATAGCCATGTCTTGCCTTCCTGATATTGCCATCCAAAGGCCTGACATAAGCCATGTAACCTCAGAACTAAAGGATTGTTTGCATTTGGAAGCATCCCTTCAAAGGACTGTGAGCAACAACAGGGATTCATTCCTCATGGATTCTGTGCTTATTGATTTCAATGAATCTGATATATCTCCAAATCCTAGGTAG 1647 0.3825 MERALQWIVVVAICASSTLIRAAGIDETPHRKLSNVDYSVDAIKRIKDIYKISRMKWQGDPCGPQVFTWDGLTCNARNPPRIISLNLSSSKLSGNIDVSFSNLANLEILDLSNNQLVGEVPEFLAKLSQLKILNLSRNSLTGPIPDALIAKSKSNSLQLSLEGNTDICQIGSCKKKKNIVRLVASNVASIVVSIIIVGIIMIWRSHRKNEGGISSTSRKDKLKLKNQTFSYSEIHNITNGFETMIGKGGFGEVYLGTLQSGERVAVKKLSMSSKQGYKEFKSEAKFLTLVHHRNVVSLVGYCDEDDAKALIYEYLSKGNLQEHLSEKLKCLGWKERVQIALDAASGLDYLHNGCKPPIIHRDLKGSNILLDENMHAKISDFGLSRTFANDNDTHVLTNYPGGTPGYLDPEFHSSGTLNKRSDVYSFGVILLELITGQPAIRGTPDKPSHIHTWVKQKLEAGDIQAIVDPRLEGNYHVASAWKFLDIAMSCLPDIAIQRPDISHVTSELKDCLHLEASLQRTVSNNRDSFLMDSVLIDFNESDISPNPR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1330 548 ProSitePatterns Protein kinases ATP-binding region signature. 245 268 IPR017441 GO:0005524
Vra6g1330 548 Gene3D Phosphorylase Kinase; domain 1 221 314 - -
Vra6g1330 548 Gene3D Ribonuclease Inhibitor 42 171 IPR032675 -
Vra6g1330 548 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN, PUTATIVE-RELATED 37 526 - -
Vra6g1330 548 PANTHER OS07G0107800 PROTEIN-RELATED 37 526 - -
Vra6g1330 548 PRINTS Leucine-rich repeat signature 106 119 - -
Vra6g1330 548 PRINTS Leucine-rich repeat signature 127 140 - -
Vra6g1330 548 ProSiteProfiles Protein kinase domain profile. 239 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1330 548 Pfam Leucine rich repeat 84 140 IPR001611 GO:0005515
Vra6g1330 548 SUPERFAMILY L domain-like 67 165 - -
Vra6g1330 548 SMART serkin_6 239 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1330 548 Gene3D Transferase(Phosphotransferase) domain 1 315 533 - -
Vra6g1330 548 Pfam Protein tyrosine and serine/threonine kinase 242 443 IPR001245 GO:0004672|GO:0006468
Vra6g1330 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Vra6g1330 548 CDD STKc_IRAK 245 509 - -
Vra6g1330 548 SUPERFAMILY Protein kinase-like (PK-like) 223 507 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1330 Vra-Chr6 25833320 25842453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1330 40 548 Receptor kinase-like Gene Family AT1G07560 48.148 6.69e-154 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra6g1330 PK_Tyr_Ser-Thr 5.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1330 - - vra:106763618 1065.45