Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1329 ATGGACAGAGAATTGCAATGGATCCTAGTTTTAGCAATTTGTGCTTCATCACTCATTAATATACTTGCTGCCAATCTTGATTATTCAGGTGTTATAAGCATTGATTGTGGGGTAGACGAGGGCTACACTGACAAAACAACCAACTTACAGTACGAAGCAGATGATATCCAATTTGGTGAAATGAATAATACATCCTTAATTTACAAGATGGACTATATAAGTCAAATTCATAAGCAGTTGAACACATTGAGAAGTTTCCCTTATGGGAAGAGAAATTGCTATACCTTAAAACCCAAACAGGGTAAGAATAAGAAATACATAATCAGGGCTTACTTTGCATATGGCAACTATGACAACAAATATAAACCACCAGTTTTTGATTTGCATCTTGGAGTCAATTTCTTGAAGACAATAAACTCTTCTGAGGCTATGGTAATTAGAATCGAAGCTGTTCATTTTACTTCAACAGAAAGAATCGATTTATGCCTTGTGAACATCGACCAAGGGGTGCCCTTCATCTCATTGTTGGAGCTATGGCCTTTGGACAATTCCATTTATCAAAGTTCCTCCACTTTGTTAACACTAGATCTTCTCACTCGACTTAACCTTGGTGCCTCTGAAGATAACTTCATCAGGTACACAGATGATATATACGGAAGGTCATGGGAAGTTCCAAACAACTATAACAAGCGTCCGTTGAAAACATCATCAGCTATTGATTTGGATAAATTTGATGATCCTTACAAACTGCCAGCAGAAGTTCTGAGTTCTGCAGTGGAGCCAAGAGATTCCAATTCCTTGGAATTCACACTCAATTATGGCACGGATTTTGAATATTACGTTTATCTTCATTTTTTTGACTTTGAGGATCGGACCAATAAACAAAAACGAAGATTGAATATTCTTATTAATGGTTTTGACGATAATAATGTGACAGAATTTCATACTCTATCATACTGGAAGCCCTATACCATAATTCTACCTATAAAACAAGGGATGGGTATTCGGAAGATATTCATCGAAACCAACTCTGATTCTGAGTTACCTGCAATGCTTAATGCTCTTGAGATTTACAGAGTATTACCTCAGTCAGATTCTTCCACACAACAAGAAGATGTTTATGCTATCTGGCACATCAAACATGTTTATATGATCAATAACAAGAATTGGCAAGGAGACCCCTGTGGACCAAAGAATTTTACATGGGAAGGTGTGAAATGCAGCAATGGAGACAGTCCGAGAATCATTTCATTAAACTTGAGCTCAAGCAAGTTGTCAGGAGATATAGATTCCTCATTCTCCAACCTCACATGTTTGGCGACTTTGGATTTGTCAAACAATGAATTGACAGGGGAGGTGCCAGAATTTTTTGCAAAACTGCCACAATTGCATTTCCTTAACTTGTCCAAGAATATGCTCACAGGTTCAGTTCCTGAGAGTCTAAAGGCAAAGTCATCTAACAACTCTTTGCAATTGAGTTTGGATGGAAATCTCCGTCCTTATTGGATAGGGTCATGCAAGAGCAACCACAAGAAGTTTATTATTCCATTAGTGGCATCTATAACAACATGTGTTGCAGTGGTCCTCACAATATCTACCATAGTTATGGTGATCTGGACACTTAGAAAAAAGGGAAAAGTGATTTCTTCAATTTCTGTGAAAGATGTGCCACTGAAATCAGCAAATCAAGTATTTTCTTACTCAGACATTCGTAGAATCACTAATAATTTCACAACAATGATTGGGAAAGGTGGATTTGGTAAGGTATACCTAGGTACTTTAGAGTGTGGCAAAAGAGTTGCTGTGAAGATACTTTCTTCACCATCAGCACAAGGGTATAAGGAATTTCAATCAGAGGCAAACCTGTTGATGCATGTTCATCACAGAAACGTGGTTTCTCTTATGGGATACTGTGATGAAGGTGATACTAAAGCACTTATTTATGAATATCTTCCAGAAGGGAACCTCCAACAAAAATTATCAGATAAGAACCCCATTTTTTTGGAATGGACACAAAGACTTAAAATTGCTATGGATGCAGCAAATGGGTTGGACTATTTGCATAATGGATGTAAGCCACCCGTAATTCACAGAGATTTGAAAACATCCAACATCTTGCTAGATGAAAATATGCATGCCAAAATTTCAGACTTTGGGGTGTCTAAAACGTTTGCTAATGATAGTGACACTTATGTCACAACTTACCCAGCAGGCACACCAGGTTACCTTGATCCTGAATTTTATTGCTCTGGGACTCTGAACAAAAAGAGTGATGTTTATAGTTTTGGAATAATCCTACTAGAGTTAATCAGTGGTCAGCCAGCACTAACAGGAACTGCAGAGAATCTCAGTTACATACTTCCTTGGGTTAACAGTAAACTGAGAACAGGAAATATACAAGAAATTGTTGATCCAAGGTTAGATGGGAAATACAATGGTGCTTCAGCATGGAAATTTGTAGGGATAGCCATGTCATGTCTCCCTCAGGTTCCAATTCACAGGCCTGACATAGGGCACATAGCCTTAGAATTAAAGGACTGCTTGTCTCTTGAATTATCACTTGAAAGGACTGTGAGCAACGTGAGAGAGTCATTGGCCATGAGTTCTAGGCAAATTGAATTCCATTAA 2628 0.3798 MDRELQWILVLAICASSLINILAANLDYSGVISIDCGVDEGYTDKTTNLQYEADDIQFGEMNNTSLIYKMDYISQIHKQLNTLRSFPYGKRNCYTLKPKQGKNKKYIIRAYFAYGNYDNKYKPPVFDLHLGVNFLKTINSSEAMVIRIEAVHFTSTERIDLCLVNIDQGVPFISLLELWPLDNSIYQSSSTLLTLDLLTRLNLGASEDNFIRYTDDIYGRSWEVPNNYNKRPLKTSSAIDLDKFDDPYKLPAEVLSSAVEPRDSNSLEFTLNYGTDFEYYVYLHFFDFEDRTNKQKRRLNILINGFDDNNVTEFHTLSYWKPYTIILPIKQGMGIRKIFIETNSDSELPAMLNALEIYRVLPQSDSSTQQEDVYAIWHIKHVYMINNKNWQGDPCGPKNFTWEGVKCSNGDSPRIISLNLSSSKLSGDIDSSFSNLTCLATLDLSNNELTGEVPEFFAKLPQLHFLNLSKNMLTGSVPESLKAKSSNNSLQLSLDGNLRPYWIGSCKSNHKKFIIPLVASITTCVAVVLTISTIVMVIWTLRKKGKVISSISVKDVPLKSANQVFSYSDIRRITNNFTTMIGKGGFGKVYLGTLECGKRVAVKILSSPSAQGYKEFQSEANLLMHVHHRNVVSLMGYCDEGDTKALIYEYLPEGNLQQKLSDKNPIFLEWTQRLKIAMDAANGLDYLHNGCKPPVIHRDLKTSNILLDENMHAKISDFGVSKTFANDSDTYVTTYPAGTPGYLDPEFYCSGTLNKKSDVYSFGIILLELISGQPALTGTAENLSYILPWVNSKLRTGNIQEIVDPRLDGKYNGASAWKFVGIAMSCLPQVPIHRPDIGHIALELKDCLSLELSLERTVSNVRESLAMSSRQIEFH* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1329 875 Gene3D Ribonuclease Inhibitor 377 495 IPR032675 -
Vra6g1329 875 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN, PUTATIVE-RELATED 25 864 - -
Vra6g1329 875 PANTHER OS07G0107800 PROTEIN-RELATED 25 864 - -
Vra6g1329 875 PRINTS Leucine-rich repeat signature 439 452 - -
Vra6g1329 875 PRINTS Leucine-rich repeat signature 460 473 - -
Vra6g1329 875 Gene3D - 195 359 - -
Vra6g1329 875 Pfam Protein tyrosine and serine/threonine kinase 577 779 IPR001245 GO:0004672|GO:0006468
Vra6g1329 875 Pfam Leucine rich repeat 417 473 IPR001611 GO:0005515
Vra6g1329 875 SMART serkin_6 575 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1329 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Vra6g1329 875 Gene3D Phosphorylase Kinase; domain 1 558 650 - -
Vra6g1329 875 CDD STKc_IRAK 581 845 - -
Vra6g1329 875 Pfam Malectin-like domain 34 360 IPR024788 -
Vra6g1329 875 Gene3D Transferase(Phosphotransferase) domain 1 651 864 - -
Vra6g1329 875 SUPERFAMILY Protein kinase-like (PK-like) 559 841 IPR011009 -
Vra6g1329 875 SUPERFAMILY L domain-like 398 486 - -
Vra6g1329 875 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Vra6g1329 875 ProSiteProfiles Protein kinase domain profile. 575 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1329 Vra-Chr6 25787612 25811289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1329 9 849 Receptor kinase-like Gene Family AT2G19210 40.255 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra6g1329 Malectin_like 4.2e-80 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1329 - - vun:114194066 1004.59