Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1325 ATGGAAGATCAAAATGGTTCCAGTGGATTTGGCAAATGGTTCCGCAAGGCTAAGCCTTACCTTGCTATGGTCTCCCTTCAGTTCGGTTACTCAGGAATGTACATCATCACCATGGTTTCTTTCAAGCATGGCATGAGCCATTGGGTTCTCTCAGTCTACCGTCATATAGTTGCCACTCTCATCATGGCCCCTTTTGCATTTTTTCTTGAAAGAAAAATACGACCAAAGATGACTCTCCCTGTGTTCCTCAGACTAGCAGTACTTGGCTTCGTTGAGCCAGTGCTTGATCAAAACTTGTACAACATGGGTATGAAGAACACCTCAACAACGTTTGCATCGGCCACAGTTAATGTTCTCCCAGCCATTACTTTTATAATGGCACTTATTTTCAGGTTAGAGACAGTGAATTTGAGAAAAATACACAGCGTGGCCAAGGTAATTGGAACCGCAGTAACAGTGACAGGAGCCATGGTTATGACTTTGTACAAAGGGTCAGCCCTTCACTTTGTGAAGGGTGAAGCAGCCCACCATGAAAGTGGCAGCACAACACAACCATCTGAACAAAACTGGGTGCTTGGCACAGTAATGCTCCTAGCAAGTTGTGGTGGTTGGGCTAGTTTCTTTATCTTGCAATCTTTCACTTTGAAGATGTACCCCGCAGAGCTCTCAGTGACAGCTTGGATTTGCTTTTTGGGCATTTTTGAGGGTTCAATTGCAAGCCTTATATTTGAACGTGACATGAGTGTGTGGTCCATAGGCATGGACTCAAGGCTTCTTGCTTGTGTTTATTCTGGTGTGGTGTGTTCTGGAATGGCATACTATGTACAAGGAGTTGTGACCAGGGAACGTGGACCTGTGTTTGTGACTTCTTTCAGTCCATTGTGTATGATTATCACTGCTGCATTGGGATCCATTGTCTTGGCTGAGCAAGTTTACATGGGAAGTGTGATTGGAGCTATTATCATTGTGACTGGACTTTATACAGTGGTATGGGGAAAAAGCAAAGACAGTGTGAACAAAACCGAGGCAGAGAAAACTGAAGGCCAAGAATTGCCAATTAAGGACAGTGCAGCATCAGAATTAGGCATTTTTGACAGCATTGAGATCAATGTTCCTTCTGGGCAAGGAAGGAATGTTCTTGCATCACCAAGAACATAA 1158 0.4404 MEDQNGSSGFGKWFRKAKPYLAMVSLQFGYSGMYIITMVSFKHGMSHWVLSVYRHIVATLIMAPFAFFLERKIRPKMTLPVFLRLAVLGFVEPVLDQNLYNMGMKNTSTTFASATVNVLPAITFIMALIFRLETVNLRKIHSVAKVIGTAVTVTGAMVMTLYKGSALHFVKGEAAHHESGSTTQPSEQNWVLGTVMLLASCGGWASFFILQSFTLKMYPAELSVTAWICFLGIFEGSIASLIFERDMSVWSIGMDSRLLACVYSGVVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQVYMGSVIGAIIIVTGLYTVVWGKSKDSVNKTEAEKTEGQELPIKDSAASELGIFDSIEINVPSGQGRNVLASPRT* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1325 385 PANTHER WAT1-RELATED PROTEIN 13 360 IPR030184 GO:0016021|GO:0022857
Vra6g1325 385 PANTHER WAT1-RELATED PROTEIN 13 360 - -
Vra6g1325 385 Pfam EamA-like transporter family 193 330 IPR000620 GO:0016020|GO:0016021
Vra6g1325 385 Pfam EamA-like transporter family 31 150 IPR000620 GO:0016020|GO:0016021
Vra6g1325 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 334 - -
Vra6g1325 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1325 Vra-Chr6 25592672 25596599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1325 11 370 Nodulin-like Gene Family AT4G08300 63.085 6.02e-166 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1325 - - gmx:100814921 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1325 6 25592672 25596599 Vra6g1325 6 25592672 25596599 ECH