Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1320 ATGAATTCTACAGCGAAACTCACTCCAAGAAAAAGAGCATCCAAGAATAGCACACCGAAGAAGAATACCACACCGAAAAAGAATAGCACGCCAAAGAGGAAGAGCACGCCGAATAAAACACCTAACAAAACCAAATCAGTTGTTGCTTCACCAGTGTCTGCTCAGAAGATTGATCTGAGGTTGGAGGCAAAGCTGTCTGCGGAGATTGATGCGAAGGTGTATGCTGGACGGAGAATACATCCCTTTTTTTCCTTGTGGAAGGAGGAAAATGAACGACGCCGACAAGCTTTATTGGCTAGGAGGAAAGCAAAAGGAATTAGTGATTCCATCCATGTATTTGAAGATGTTCAGGATAATGCATCACCCATTGACTGGAGTGACTGGACATTTTTGGATAATACCACAGTTGCATATTTGGATAGTCAGAATTCAAATTTATCTTTTATGGAGGACGCGGTTGAATCTTTAAATTTTGATAACATACATAGTGCGTCTGAAGAGGATGTCATAGATTGTCCAAGTCAACTTTCTATACAGTCACATAATAAGCTGGACATATCACAACCAAATTCAGAAGTTAAATGTCTTTTGAAGACCGAAGATGACGATGTGGACCTGAACTTGGAGGTGAATGAAAATACAGGATACAATGATATTTTCAGAAAGCAGGAACCACAAGCAAGAATAAGGTCTTACCATAATTGTGAAGGTAACAACAGCTTATGGATAGACAAGTACAAGCCAAAAAAAGCCTCTGAGGTGTGTGGTAATGAAGAGGCTATGAATTCCTTGCGTGACTGGTTACATCTTTGGCATGAAAGACTTTCTCAGTGCAGAAAAAGTTCCTATAACAAAGGTCGAAGTGATAGACAAGATGCTTCAGAAGACATCCATCAGGGTCCTCTGCAGAGTGTTCTCTTGATTACAGGACCAATTGGGAGTGGCAAGTCTGCAGCTGTCTATGCCTGTGCCCAAGAGCAAGGGTTTAAAGTTGTAGAGATCAATGCATCAAGTTGTCGAAACGGAGCTGCTCTCACTGCTATCAAGAATAAAATAGAAGAACCTCGTGCAGGCAAAATCACAAGTTGTTTCAAACCTGTGAAGTTGCTTCCTGCTTCTGATGATGAAGCCAGCCAAACTTTAATTCTAGTTGAGGATGTGGACATCATTTTTCCTGAAGATCGTGGTTGTATTACTGCCATACAACAACAATTTTCGGCCACCAAAAAATGGCCTATTATATTTACCAGCAATAGAAATAATGGTGGCCTACCAAAAAGTTTTGCAAGACTACATGTTTCTTTCTCATCTCCGTTGCCAGATGAGTTGTTTTGCCATATATACAAGGTTTGCATGATAGAAGAAGCCAATATTAATCCTCTCTTATTGAAAAAAATTATCCAGTCTTGTGATGGAGATATTCGGAATACTATTATGCAACTTCAGTTCTGGTTCCAGAGTAAAAAGTATACCGAAGACAGGAAAGTGCCAAAGGTGTATGGTATGCTTCCTTTTGATGTTGAGGCTTGTCACCAGATTATACCAAAGATACTACCATGGAATTTTCCCTCTGAGTTGTCCCAACTCATTGAGAAGGAAGTTGCTAAGTCAGTAGCCACAATGGATGAAAACTCGTGCTTGCAGGTTTTAGATGTGAAGTTTACGAATACTGATTATGTAGGGAACAAGAGGAAGATAATCAAGAGATCCCTTACAGACTGCAATGGGTTTGAAAGTCAACAAAGTGCTATTTCTGAATTTTCCAATTGCTCTGGATGGCAAAAGGGCCAAAGTAAACATGTACTGATGAGCTCTGCGAATCATCCAAATAATGCACATTCTTTAGACGTTCATGAGGAAGTTTACAAGAGACATTCCCTTGAAAGCAACAGTGAATATCTCTTAAAGTTTCAAATGAATAAAACCTATCCAAGTACATCATTTTGCAAATCTGATAGTTCTGTTTTGGAAAGAGAAACTGCTTATGATGCATGCTTAAATGAAACGCATAAATCATTTTATGCATCCTGTTTCCCTGGATCAATATCCGTTCCTGAGACAGCAATTCAAAGTGGAATAAAGCCAATGACTGGACCAGTGTCTTCTTGCAGTCATGCTGATTCAGTACAAGTATCTCTCAATAATGAGCTGACACCAGTCACTTTCAATGTTTGTCAATCCTCAGACAAATTGCAACCAAATTCTGATCCATTTGCAAATACTGAAATTCCAGACTCTTCTTTTACAAAAGCAGCTGTGCAAACCTTCAGAGATGGAAACATGAAAACCACAACTGTGAGTAGTGTCACAGATGAGTGCAGTCATGCTGATTCTACATCAAACTCAAAGTCTTTTGACTCCAGTTCATCGGTACCAAAGGATATGGTACAAAAATTGTGGAGGGAACTTCGTATATGTCAAAAAGATTTAGGACAGCACGCCAACCCAGAACAGCTGAATGTAATTCAAGTTCTTAAACTTACTAGTGGGCTGACCGATCTAATTTCTGAAGCTGACTTATTGTTTCGTAATCACCAACAAAAACAATGTGGTATCATGGAGCCTCCGATGAACCTTTTTGAAGAAGCCACAAAGAGTTGGTATGATGAGCAAATGATGATGTCTACAGTTGCTGTACATGGTTTTTCTTTTTATGCCAAACATATATCAGATGTAGGATCCATGTTTGATTCTAAGAACGAGGTAGATCTAATCTCAGAGATGCTGGCTAGCACTACTAATGTTATGGGACTGGGAAAATTGTCTAGACAGGACCAAACAAAAAGCACTAGTATCTATGCCAATAAGCTATTCGAGATGAATGACCCGACAAATGATACCAAGAGAACATCTCTTTCCAACGTGATGGGGTCTATCATTCCAGAAAGATCATCCTTGTCAGTGAAAGGTCTTGCATTAAGTGAATATATGTCTTCAGTACGCCAAATGTCAACTTCTGAAGGTTTCCGCATCCCACATGGTTCAGAAAATAGGAGAAAACGAAGGAAGAAGTGTTGA 3018 0.395 MNSTAKLTPRKRASKNSTPKKNTTPKKNSTPKRKSTPNKTPNKTKSVVASPVSAQKIDLRLEAKLSAEIDAKVYAGRRIHPFFSLWKEENERRRQALLARRKAKGISDSIHVFEDVQDNASPIDWSDWTFLDNTTVAYLDSQNSNLSFMEDAVESLNFDNIHSASEEDVIDCPSQLSIQSHNKLDISQPNSEVKCLLKTEDDDVDLNLEVNENTGYNDIFRKQEPQARIRSYHNCEGNNSLWIDKYKPKKASEVCGNEEAMNSLRDWLHLWHERLSQCRKSSYNKGRSDRQDASEDIHQGPLQSVLLITGPIGSGKSAAVYACAQEQGFKVVEINASSCRNGAALTAIKNKIEEPRAGKITSCFKPVKLLPASDDEASQTLILVEDVDIIFPEDRGCITAIQQQFSATKKWPIIFTSNRNNGGLPKSFARLHVSFSSPLPDELFCHIYKVCMIEEANINPLLLKKIIQSCDGDIRNTIMQLQFWFQSKKYTEDRKVPKVYGMLPFDVEACHQIIPKILPWNFPSELSQLIEKEVAKSVATMDENSCLQVLDVKFTNTDYVGNKRKIIKRSLTDCNGFESQQSAISEFSNCSGWQKGQSKHVLMSSANHPNNAHSLDVHEEVYKRHSLESNSEYLLKFQMNKTYPSTSFCKSDSSVLERETAYDACLNETHKSFYASCFPGSISVPETAIQSGIKPMTGPVSSCSHADSVQVSLNNELTPVTFNVCQSSDKLQPNSDPFANTEIPDSSFTKAAVQTFRDGNMKTTTVSSVTDECSHADSTSNSKSFDSSSSVPKDMVQKLWRELRICQKDLGQHANPEQLNVIQVLKLTSGLTDLISEADLLFRNHQQKQCGIMEPPMNLFEEATKSWYDEQMMMSTVAVHGFSFYAKHISDVGSMFDSKNEVDLISEMLASTTNVMGLGKLSRQDQTKSTSIYANKLFEMNDPTNDTKRTSLSNVMGSIIPERSSLSVKGLALSEYMSSVRQMSTSEGFRIPHGSENRRKRRKKC* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1320 1005 MobiDBLite consensus disorder prediction 1 51 - -
Vra6g1320 1005 CDD AAA 306 448 - -
Vra6g1320 1005 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 376 1003 - -
Vra6g1320 1005 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 23 347 - -
Vra6g1320 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 501 IPR027417 -
Vra6g1320 1005 Gene3D - 239 434 IPR027417 -
Vra6g1320 1005 MobiDBLite consensus disorder prediction 984 1005 - -
Vra6g1320 1005 Gene3D - 441 500 - -
Vra6g1320 1005 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 376 1003 IPR004582 GO:0006281
Vra6g1320 1005 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 23 347 IPR004582 GO:0006281
Vra6g1320 1005 Pfam ATPase family associated with various cellular activities (AAA) 306 419 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1320 Vra-Chr6 25486116 25507336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1320 242 483 Core DNA Replication Machinery Family AT5G22010 25.714 4.23e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1320 - - vun:114193822 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1320 6 25486116 25507336 Vra6g1320 6 25486116 25507336 ECH