Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1315 ATGGCTCACAATCACAACTCCACCGATTCTCCTCTCTCTCGTCGTATAGTTCGTGCCTTCCTCCACTTCCTAAATTCTGTTGAACCGGGTCCCGGGGTTGATGCTGAGGGGATTCAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAACTTAATTCTTCTTCTGTGGATGGGGATGATGGGAAATCTGAATCTTTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAAAATGAAACTAGAAAGTCGGATGTTGATACTCAATGGAATTGCGCGAATGCTTCCAGTTCATTCTCTGCATCTAAAGATGAACTGTGCGGACAGTTCTTTGCTGCTTTGGAGAAAAATCACTATTTCAGGAGAAATACTGATGGGAGTGATGACATGGTGCAACTGGAGAAAGCATGTTCTTTTTTTGATGAAGGTTGTAAGGAGATGGTAAGATCTGGTTGTCAGCAGTTCTGTTTGATGAGTTTGGCCGAATCACTAAAAACATTAGGTAACAAGGCAATGCAATCTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCTGTCGCACTCAATGAAAAGAATGCTGTTTACTTTTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATTCGGAAGCAATTCAAGATTGTCTTAGATCTATCAAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCGTTGCAGTTGGATCCAAATAATGGCTCTGTCAAAGAAAATATCCGGGTGGCTGAGCAGAAATTATTCGAAGAGCAAAACCGTGCACATCACAACCAGAATCCAACAAGATCATCGCAAGAAGGTCCAAACCAAACTGCACAACCCACATTTTCTTCTGTGCCATTTAACCCCAGCCAAATGGCAAACATGCTCAGGCACATGACCTCAAACGCTACAAATTCACAACAGAGGCCACCAACTGAGGAATGGGAACAAGAAACTACTAGTGAAATTAGATTTGGGGCAGATATTTTAAACATGGAGCAAATTCCGGAGAATCTAACAGGGGCCGTTCAATCTATGATGGAAATTTTATCTAGGACCGTAAACCCGGGGCAACCACCTGAGGATCAAACCAATCCAAGAACAGGACCAAACTAA 1188 0.4167 MAHNHNSTDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIQVARECLTEAFKLNSSSVDGDDGKSESLIDIFKSLEANKQNETRKSDVDTQWNCANASSSFSASKDELCGQFFAALEKNHYFRRNTDGSDDMVQLEKACSFFDEGCKEMVRSGCQQFCLMSLAESLKTLGNKAMQSKKYNDAIELYNCAVALNEKNAVYFCNRAAAYTQINKYSEAIQDCLRSIKIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNGSVKENIRVAEQKLFEEQNRAHHNQNPTRSSQEGPNQTAQPTFSSVPFNPSQMANMLRHMTSNATNSQQRPPTEEWEQETTSEIRFGADILNMEQIPENLTGAVQSMMEILSRTVNPGQPPEDQTNPRTGPN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1315 395 Gene3D Immunoglobulin FC, subunit C 1 76 - -
Vra6g1315 395 Gene3D Tetratricopeptide repeat domain 158 309 IPR011990 GO:0005515
Vra6g1315 395 ProSiteProfiles TPR repeat profile. 161 194 IPR019734 GO:0005515
Vra6g1315 395 MobiDBLite consensus disorder prediction 287 313 - -
Vra6g1315 395 MobiDBLite consensus disorder prediction 281 313 - -
Vra6g1315 395 Pfam TPR repeat 204 243 - -
Vra6g1315 395 PANTHER LD24721P 9 390 - -
Vra6g1315 395 ProSiteProfiles TPR repeat profile. 229 263 IPR019734 GO:0005515
Vra6g1315 395 PANTHER LD24721P 9 390 - -
Vra6g1315 395 SUPERFAMILY TPR-like 160 274 IPR011990 GO:0005515
Vra6g1315 395 SMART tpr_5 195 228 IPR019734 GO:0005515
Vra6g1315 395 SMART tpr_5 161 194 IPR019734 GO:0005515
Vra6g1315 395 SMART tpr_5 229 263 IPR019734 GO:0005515
Vra6g1315 395 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1315 Vra-Chr6 25357700 25367222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1315 159 286 U-box Gene Family AT3G07370 26.515 3.12e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1315 K16365 - gmx:100799770 530.791