Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1306 ATGAAAATGCTGCCAACTTCCACCGCCGGAGAGCTCAGCCAAGGTGGCCGGACGGTGGTCGTTGGAGTGAAGATGGACTCCCACAGCACCGAGTTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGGGATGGGAAATCGTCTTTATTTTCACTTGTCAAAGCGTTTGACTCTGTGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATTCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCACATCATAGTCGGAAGTCCTCAAGGTCTTCACAGAATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAGGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAAGAGGGATGGATCACCAGCAACTGCAGCTGACATGAAAGGAGTTGATCAGAACCACGCAACTGGGGTGCTTGGTTCATTTCACATGACACTTGGCAATACTTCAAAAGTGCTAGATGATGATGGTACCGCGATGCAGGGAAAGGGTAGTGGTCAATTTTCAGATCACAGTTTGGCTAAGGCTTTCCTGGAATCTAAAGAATTCATTGAGAAGAAGAGTTGCTCTGTTTGTTCTTCAAACCCAGCACTGTTTGGTTTATATTGTAACCATTCCGATGAAGAGTCTTGTGGTGATGCTTGTGATGAGAACCCTTTGGCAATAGTGTCTGTGCAGACCAATGATTCTGCTTCTAAACCAGGTTGGCCTTTGCTTCACAGGACAATTGTATCTGACAGAAAATGTTCTGAAAGATCGATGTTTCGCCAGATCTCTGTGGTACAATGGGCAATGCAGTTACCTTCTAGAAATCTTTCATATGCTGCACATCTTGATCAAAAAGCAGACAATTGTGGCCCAAATAAGGATCAGTTTTTGGGTCTGGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAATTAGGGACTGCCTCTGTGCCTGAACACAACCCTAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAGATACTCATCCAGTTGCAGATTGTTTAAGTACCAAGAACTTGTACTTGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGCCAGGTATACAGAGGCTGCCTTCCTGATGGCAAGGAACTAGCTGTTAAGATCTTAAAGCCATCTGATGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTTGGATTCTGCTTTGAGGATGGTAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCACGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCCATGGGTGTTGCTGAGGCTTTGGAGTATCTACATAATAATGAAAGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAAGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCAAAATGGGCATCAACTTCATCATCACATATAATCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGAAAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTCCTTTCAGGGAGAAAGCCCATAAGTAGTGATTATCCAAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAATAGTGGGAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAGATGGAAAGGATGGTCTTGGCAGCCACACTTTGTATCAGACGTGCTCCAAGAGCTAGACCTCAAATGAGCCTTATCAAAAAGCTCCTTGGAGGTGATGGTGAAGTGATGAAGTGGGCAAGACTAGAAGTGAATGCTGTGGAAGCAGCAGAAATGGCTGATGATGAAGCTTGTCTTCCTTCTTCCAATCTGCAGTCACACCTTAACCTTGCTCTGCGTGATTTGGAGGATGACTCACTCTCCATTTGTAGTGTTGAGCAAAACATCTCATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCAAGCTTTGATTGA 2232 0.4332 MKMLPTSTAGELSQGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHIIVGSPQGLHRIRPCISVARYCAKKLPRDCWVLAVNNGKIVFKRDGSPATAADMKGVDQNHATGVLGSFHMTLGNTSKVLDDDGTAMQGKGSGQFSDHSLAKAFLESKEFIEKKSCSVCSSNPALFGLYCNHSDEESCGDACDENPLAIVSVQTNDSASKPGWPLLHRTIVSDRKCSERSMFRQISVVQWAMQLPSRNLSYAAHLDQKADNCGPNKDQFLGLDSKSGALVPVDAELGTASVPEHNPRSIPKELEGLHERYSSSCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKKNPLVFGWTERYKVAMGVAEALEYLHNNESQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRARPQMSLIKKLLGGDGEVMKWARLEVNAVEAAEMADDEACLPSSNLQSHLNLALRDLEDDSLSICSVEQNISLEDYLRGRWSRSSSFD* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1306 743 Gene3D HUPs 16 153 IPR014729 -
Vra6g1306 743 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Vra6g1306 743 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1306 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vra6g1306 743 Gene3D Transferase(Phosphotransferase) domain 1 471 676 - -
Vra6g1306 743 ProSiteProfiles Protein kinase domain profile. 396 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1306 743 Pfam Universal stress protein family 17 149 IPR006016 -
Vra6g1306 743 CDD STKc_IRAK 402 661 - -
Vra6g1306 743 CDD USP_Like 18 149 - -
Vra6g1306 743 SUPERFAMILY Protein kinase-like (PK-like) 376 667 IPR011009 -
Vra6g1306 743 PANTHER OS01G0253100 PROTEIN 10 737 IPR045271 GO:0004714|GO:0006468
Vra6g1306 743 Gene3D Phosphorylase Kinase; domain 1 364 470 - -
Vra6g1306 743 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 10 737 - -
Vra6g1306 743 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Vra6g1306 743 Pfam Protein kinase domain 400 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1306 Vra-Chr6 25046146 25050118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1306 383 666 Trihelix Transcription Factor Family AT1G68690 46.367 6.86e-78 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra6g1306 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1306 - - aprc:113846853 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1306 6 25046146 25050118 Vra6g1306 6 25046146 25050118 ECH