Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1305 ATGGATCAACACCACTTCCTCCACCACCACTACCACCACCCTCAGGACCACCGCACCACCCGCTACGCTTCCCTCAACCCTCAATCGCATCACAACCACCACCACCATAACAACCTCCCACCGCCGCCGCCCGCGCCGCCACCGCCTCTCTCCTACCACCGCAGCCTCCACCCGACTCCCCTGCCGCAACCCTACACCCCTTCCACTCCCCAACCTCAACAACAACAGCAGCAGCAGCAGCAACAATTCTCTTTCAATCACCACTCATCTCTCCCACACCGCACCCTCGAAGACGATTCACGTTCTCTCCCCTACGACCTCCTCCCTCGCCGGACCACCGCCATCCCCTGGAACCCTAACCCTAGAACTGACGATTTCGATCGCGAATTCCACCACCACCACCACCGCCCTCCCCCGCCTCCGCCTGCCCCGATCGAAACCCTCCGCTACGACCCCGGGCGCCGTGACCGCCTCGTGGTGGATGCCTACGAGCAAAACCCCAGGGAGGCACTCTCTTGGGGCGGCGGTGAATACCACGCACCTAGCCAGGGCGACGTAGAGCCCCCGCCCTACGTTCGCGTGTACAGCGTGGAATGTGACGCTGACGTGGCCGGTAGAGGGTCCCGGGTGGAGAGCAAGAGGTGGGTGATGAGTGATAGAGAGAGGGAGAGGGAGAGGGGAAGAGAGTTGCACGATTCTTCTTCTAATTTAGTTAGCAAGGTTAGTAACACTGACAAATATTATCATGGTTCTGATAATGTGGGTAGGTATAATAGAGGGAATAGTAGAGAGCGTAGTCATGAATTCGCACGTACTCCTCCTAAGAAACAGATGCAGAAGAAAAGCGCGCTTCTTAGGATTCAGACGGCTAAACCTAATCATAGGAACCGTGAGGTTGAGCAGTTACGGTACCCCAGTTATGGACCTGAAGGTAGCAATGGCTTTTTCAGGGGTAAGGAACAATATTTGGTTCATGGGGTGAAGGGGGAAGAGAGAGAAGGGAGCCCTGTTGAGATTGATATCTCTTTTGAGTCCAATTCTCTGGTGGCCAAGGCTATTGTTGCGCCGCCTTCGAGTTCAGTGTCTGTTCCTGATTTGAATGTGACGCCGGTTTTGGATTCGGATTTGGGTTCTGGGGAGAAGAATAAAAGGGTTTTGGGTTCTGGTTTGCATCAGCCGTATAGAGTGTCTTCCGTTGTGGTTGTGGATTTAAATAGGTCGCCTTGCAAACGTAATGATAGGTCTGGTTTGGGGAAGGAGGTTAAAGTGCAGAAGAGTGTTCAGGATAGTTCTTCTCGGTCTCGTACTAGGGAGGCTGATGATTCTCGTGGGCAAAATGCGGCGCCAAATTCAGTTAAAGCTGGCAATGTCTGTTCTGGAAAATCGACCATAACGGTTGTCAAGAAGAAGAAAATTGTTAAGAGATTGGTGAAGAAAGCTAGTGCAAACTCTAAGACATCTGTGCCAAATTCATTGCAAAAAAGGCTTCCTGGAACTGTGAAAGTCGAGAGTGCTGCACTGATTTCGTCAACGGCCTCTATTCCTGAGAAAATTCAAGCTAATTCAGATGACAAAATCAACATCGTTGATGAAGTGCCAGACTGTTTACATTCTTTGCCAAAGGAAGGTAATGTATTGAAAGAAGATAAAGAGGGAGGTTTACTGCAGCTGAGTTTGGGGCCAGATTACAAATCGCAAGAGTGTGACGAAGATTCTGATAATAGGGAACTGTCCAGGTTTGATATTGAAAGAGATGGAAACATTCCAAAATTTTCTTCTCTTGCTTCTAGTAGTGAAGATAAGAAGAGTGATTCAGATTGTTTAGATGTTAATAATGATGTCCTTGATAATGGAAATATTATTTTTATGCATGATAATGCAAATACTTCCGATTGTTTAGCTGCAAATAATTCTGTTCCAGGTACTATTTCTGAAGTCAATCACATGGATTATGATAATAAGCAATTATGTCAGAATGAAGGATCTCTATCGGTTGGGAATTATTCAAATGTACAATCCCCACTGAATAGCAATCTTGTAGATGCAGGGGATGAGATATTAAAAACCAGCGATACTTTTTCAAGTTCAAGAAAAATTGGGATTCAAGATGGTCTAGATTGCCTACAACATACCAGTGCACTGAAGCAAGGCTCTGATAATGGATCATCTAATTTAGAAGATTGTATTATTGTTCACGGATCTGGTATCATGAATGATGCTGGAAACCAATTGGCCCATGGTGATGTCACCATGCACCCTGAGAATTGTGAGACAGAAAAAACATTCCCAAATTCTAATATTTTAGCTGGATCTGGTGAAGGGAACACAAAGAAGATAAAAAAGAGAAAAGCTAGAACACAATTTAATATTTTGAGTTCAGAGATGGAATCCTTATCTCCAGATCATGTAAATCCTGATAACCTTGCAAATAATGTGGACGGAGGTACAGTTCTATTGTCGAAAGATCCATCTGCTTCTAAAGTTTTAGATCAGTCTGTTCAAAACGATGTTGAGTCAATAACTAGTTTGGATGGGGTTACTGCTTTACATGAGGAAGGGGAGTTTTTAGAGACTCAGTTTTATGCTGCAAATAACAACAATGGTGATGCAAATGAGGTTTCACCATCTTCTAAAAGGAAAAAAGTTACAGCTAACCCAAATTTTACTCAATGTCAATCGCAAATCAGTGCTGTTATTGTGGTTACCACCACATCTGATGTTGAAGCTCCTGTCAATCTCAATGATAACCAAGAACATCAGAAAGAATTTGCGTTGTCAAGCATGGGTATGTGTTTACCGACTTCTGTTCAGTCAATGCCTTCTGTTCAGTCAATGCCTTATTCAGAGAGTATTACTAAAATGTCTGACAATATTTTGAGTGGAGGATCTTTTGACTCTACTGATGCAAATAGGGAAACCATGAGTTCCGAGTATTCTGAATTACAACACTCAGATATTGTCTCTTTTTCACCATGTGAGGACTTAGGATTTCAAAACAATCAATTCTCAACATTGGAAGGTGAGTGCATAGAAAACATTACTCCAGTTGTGCTTGTGAGTAATACTCAAATTGATGTTTTAGGTGTTGGAAATACAATGGGAGAAAAGACTGATTTACAGGCCGTTAAGGAACATCATCAATGTAGAGAATTTGTGCAAAGGTCACCAAGAGCTGACATGGAACCTAATGATCTCAATGTTAAGAATGATTTGCTTGCGCAGCAGAACCTTATGTCCTGTCCAACTAGTGGTGATGAAGTCACTACAAGTAATTCGAATGATGAATTCACTGTGGATGCACCTGGTGCATTGTCAGATATATTTTCTCAAGGGATGGCATCTGAAGTAACAGATAAAAGGATTTTAGAATTGACAGCTATCAATGATGAAAATATTTGTGGGGTTGAAGAAAATATTTCGTCAGTACATCAGACGAAACTGAATAGTAGGTCAGATAGTGCATTTGGACACAGTAATATGATAACAAAGAAAACAATTTCAGAACCATCCCAAGTTTCTTCCAAAGTAACAACTCAGGCTCTAAATTCATATCGTTTTGGGTCGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTTACCTTTTTGAAGTCTGAGACAAAGACATCTGCCTCTTCAACTCATGTGTCAAAGCCTCGAACTTGGCATCGGATAGGTAATAATCCCCCTATTTCTCTACCTAGAATCAATTCAGTAAGAGCAGTTCCTCCCAAAAGGCCAATTCTAGAAAGGAAAGGGAACTTTCAAAATACCTCGTATGTTCGTAATGGAAACAGTCTTGTAAGGAAACCTACTCCAGTTCCTGCTTTACCTCAAATCTCCTCTGTAAATAAGTCATCTTCGGGCTTTGGTGAAATATCAAAAAGCACTAAATCTGAAAGCAGGGCTGACGTGACAGATCAACCAATGTACCTGAGAGCAGGAGCAATATTTTCTCAGCAGAGGCAGAGACAGAGAACACCTCCACTACCAATTGACACCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTCATTCTGGTGGTTCCTGTGAAAATGTATCTGATCCTAAAACATTTATAGAAATTAATAATAATGCACAGAACTCTTCTGAAGATGCACTGAAGCATTGTGAAATTCCAGAAAACCAACATGTTCCATCCGATAACGGGGAGAGTCAACTTGAAGCAAACGAAGGCAACCCCCTTTCTTTAAATACGAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCGTGTGATGTTTCTCTCTCCACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAGTTGGTTAGGACTACATTTGAAAGCCATTCCAACCAGACTGCTGCAGTGCCTAATGGCACAGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAATACGAGGTTTAGTAAGAAGCGGTTACATAAGGCTGTCAGGAGTTCATGCAAACGTTCAAGAGCCTCACTAGTGTGGACACTCTGTAGCAAAAATTCGTCTGAAAATGACAAGAATTCACGTCATAATCAAAAGGTTTTGCCTCAATTGTTTCGATGGAAAAGAGCAACATTTGCTTCAAGTTTCAATAGTAGTTCCGTATCTGCAATCAGCAAAAAATTGCTTCAATTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACACGGGTTTTCACTTTGGAAATCCCGAGTTCTAGGTGTTGGTGGTTGTAGTTTGAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAAGCTACACTTGCTGTTGCTGCTGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGTGGTTTGCATCAGTTCTCAGTCAAAGAGAGAGCGAATATTTCGTATTGGTTCAGTTCGATACAGAATGGATCCCACCAGGAGGACACTCCAGAGGATTTCAGTTGATGAATCCCAGTCCTCGGCGTCTACCAGTTCAGGTTTGGCCTCCAAAAGTGCTTACATTCCAAGGAGATTAGTGATTGGAAACGATGAATATGTACGAATTGGAAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACCAGATTCGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTAACGCACCAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGTAATTGTCCATATAGACATGTCAATGTGAACCCCAATGCATCGATTTGTGAAGGATTTCTTAGGGGATATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACCGAAGGATCCAAATGCAAACTCCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCATAAAAACACCAGAGGGCGCTATTTTGGTTTTATTCCTGCTGATGTTTCTGAATCTGGGATGATGGTTGCTCCAAACCGACATAAACAAAGTAGTGAAATTGAAGAGGAACTGTCTGACTACATCAGCCTTGATGTTGTCAGTGAAGAAGTCGCAGACACTGATGATCTATCATTTGATCCAGCAGTGTTCTGTGAGAATGATTCCTTGGATGATCTTGATGAACTCATTAAACCAGTTCTTCTACTGAAAACAAAGTTCACATCACAATCACCTAACTCACATACAACTGGTGTAGACTTCGGTCGTTTGTTAATGAGGTAA 5967 0.4255 MDQHHFLHHHYHHPQDHRTTRYASLNPQSHHNHHHHNNLPPPPPAPPPPLSYHRSLHPTPLPQPYTPSTPQPQQQQQQQQQQFSFNHHSSLPHRTLEDDSRSLPYDLLPRRTTAIPWNPNPRTDDFDREFHHHHHRPPPPPPAPIETLRYDPGRRDRLVVDAYEQNPREALSWGGGEYHAPSQGDVEPPPYVRVYSVECDADVAGRGSRVESKRWVMSDRERERERGRELHDSSSNLVSKVSNTDKYYHGSDNVGRYNRGNSRERSHEFARTPPKKQMQKKSALLRIQTAKPNHRNREVEQLRYPSYGPEGSNGFFRGKEQYLVHGVKGEEREGSPVEIDISFESNSLVAKAIVAPPSSSVSVPDLNVTPVLDSDLGSGEKNKRVLGSGLHQPYRVSSVVVVDLNRSPCKRNDRSGLGKEVKVQKSVQDSSSRSRTREADDSRGQNAAPNSVKAGNVCSGKSTITVVKKKKIVKRLVKKASANSKTSVPNSLQKRLPGTVKVESAALISSTASIPEKIQANSDDKINIVDEVPDCLHSLPKEGNVLKEDKEGGLLQLSLGPDYKSQECDEDSDNRELSRFDIERDGNIPKFSSLASSSEDKKSDSDCLDVNNDVLDNGNIIFMHDNANTSDCLAANNSVPGTISEVNHMDYDNKQLCQNEGSLSVGNYSNVQSPLNSNLVDAGDEILKTSDTFSSSRKIGIQDGLDCLQHTSALKQGSDNGSSNLEDCIIVHGSGIMNDAGNQLAHGDVTMHPENCETEKTFPNSNILAGSGEGNTKKIKKRKARTQFNILSSEMESLSPDHVNPDNLANNVDGGTVLLSKDPSASKVLDQSVQNDVESITSLDGVTALHEEGEFLETQFYAANNNNGDANEVSPSSKRKKVTANPNFTQCQSQISAVIVVTTTSDVEAPVNLNDNQEHQKEFALSSMGMCLPTSVQSMPSVQSMPYSESITKMSDNILSGGSFDSTDANRETMSSEYSELQHSDIVSFSPCEDLGFQNNQFSTLEGECIENITPVVLVSNTQIDVLGVGNTMGEKTDLQAVKEHHQCREFVQRSPRADMEPNDLNVKNDLLAQQNLMSCPTSGDEVTTSNSNDEFTVDAPGALSDIFSQGMASEVTDKRILELTAINDENICGVEENISSVHQTKLNSRSDSAFGHSNMITKKTISEPSQVSSKVTTQALNSYRFGSSGTKNQSGSVIPKTFPGHSFTFLKSETKTSASSTHVSKPRTWHRIGNNPPISLPRINSVRAVPPKRPILERKGNFQNTSYVRNGNSLVRKPTPVPALPQISSVNKSSSGFGEISKSTKSESRADVTDQPMYLRAGAIFSQQRQRQRTPPLPIDTKSEENTSSSLVEPHSGGSCENVSDPKTFIEINNNAQNSSEDALKHCEIPENQHVPSDNGESQLEANEGNPLSLNTKRIVYIKPKTNQLVATSNSCDVSLSTDDNGQTAFSDGYYKRRKNQLVRTTFESHSNQTAAVPNGTANSDGQGTSNALCNTRFSKKRLHKAVRSSCKRSRASLVWTLCSKNSSENDKNSRHNQKVLPQLFRWKRATFASSFNSSSVSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNVVCISSQSKRERIFRIGSVRYRMDPTRRTLQRISVDESQSSASTSSGLASKSAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPNASICEGFLRGYCADGNECRKKHSYVCPTFEATGTCTEGSKCKLHHPKKQSKGKKRKRSGDHKNTRGRYFGFIPADVSESGMMVAPNRHKQSSEIEEELSDYISLDVVSEEVADTDDLSFDPAVFCENDSLDDLDELIKPVLLLKTKFTSQSPNSHTTGVDFGRLLMR* 1989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1305 1988 MobiDBLite consensus disorder prediction 111 146 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 1865 1883 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 359 386 - -
Vra6g1305 1988 ProSiteProfiles Zinc finger C3H1-type profile. 1792 1818 IPR000571 GO:0046872
Vra6g1305 1988 MobiDBLite consensus disorder prediction 1857 1887 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 244 281 - -
Vra6g1305 1988 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 330 1966 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 1326 1363 - -
Vra6g1305 1988 PANTHER CCCH ZINGC FINGER 330 1966 - -
Vra6g1305 1988 SMART c3hfinal6 1846 1868 IPR000571 GO:0046872
Vra6g1305 1988 SMART c3hfinal6 1737 1765 IPR000571 GO:0046872
Vra6g1305 1988 SMART c3hfinal6 1766 1790 IPR000571 GO:0046872
Vra6g1305 1988 SMART c3hfinal6 1819 1845 IPR000571 GO:0046872
Vra6g1305 1988 SMART c3hfinal6 1792 1817 IPR000571 GO:0046872
Vra6g1305 1988 Coils Coil 1615 1635 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 1285 1304 - -
Vra6g1305 1988 Gene3D - 1764 1818 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 25 84 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 38 69 - -
Vra6g1305 1988 ProSiteProfiles Zinc finger C3H1-type profile. 1819 1846 IPR000571 GO:0046872
Vra6g1305 1988 ProSiteProfiles Zinc finger C3H1-type profile. 1737 1766 IPR000571 GO:0046872
Vra6g1305 1988 MobiDBLite consensus disorder prediction 1271 1363 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 122 136 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 407 455 - -
Vra6g1305 1988 Gene3D - 1819 1882 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 1470 1489 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 258 275 - -
Vra6g1305 1988 MobiDBLite consensus disorder prediction 70 84 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra6g1305 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1305 - - vun:114193719 3340.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1305 6 25018487 25027938 Vra6g1305 6 25018487 25027938 ECH