Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1303 ATGTGGAGAGAGGCAGCATGGTTGATGGTACTGCTCCTTCTATTCCACCAAATTTGTGCTGCCAAGGACGATGAAGAACACCTTTGTCCCCCTTCTTCCTGTGGAAAAATCACCAACATAAAGAAACCGTTTCGATTACAAGGCGACCCAGAAAACTGCGGACACAAAAGTTATGAGCTTGGTTGTGAGAATAATGTTACCGTGTTGTATCTGCTCTCTGCAAAATATCAGGTGGAGGCAATAAACTACAACAACTACACAGTGAGAGTGGTTGATCCTGCACTTCAACATCACAATTGCTCCTCCCTTCCTCTCCATTCCTTCTCTCGCTCCAATTTCTCTGATACTTATTACAACTACTACTCGGATCTATACCAAGCCGGTCTAAGTGCATATGACAATTGGGAATCTCTGATTTTCGAGCATATAGTGTTTTTGAACTGTAAGCATTCAGTGAAAGATAATAGGAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCCGAGGGCTATGCATATGCAGTTGGTGGTGACCTAAAAGCTGAGGACTTTGAAGTTGGGTGCGATGTAAAGCTTGTTGCTCCAACATCTTTGAGGAGTTTGAATTACGATTCCTACACTGCCATCCACAGGGGACTGGCCTATGGATTTGAGATTTCATGGGTAAAACTCGCCTGTCAGAAGATTATCTGTTCACAGTTTAACACCTACTGCTATTTCAACATTAAGAGCCAAAATCTTGATTGCGGTGGACATTGGCATCTTACTGCTATGGCATGGGCTTACAAAATTTTGTTTGGATGGCCGTTCTTAATTGTGGTTTTCATATTGAAATGGAAAAAACGACATGCATCAACATATGAAAATATTGAAAATTATCTGGAACAAAATCACCTGGTGCCTATTAGATACTCATACAAGGAAATTAAGAAGATGACTGAAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGTTTCGTGTTTAAGGCAAAGTTGCGGAGTGGACCTTCCGTGGCAATCAAAATGTTAGGCAAATCGAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTCAGTGGCTCAAAGCGAGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAAGAGATGAAAATATAGATTTTAGCTATGAAAAAGTATACAAGATATCTATTGGAGTAGCTCGTGGAATTGCCTATCTCCATCATGGATGTGAGATGCAGATTTTGCATTTTGATATCAAACCCCATAACATCTTATTAGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCTTCGTCACAATGACAGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTTTATAGCTTCGGAATGTTGTTGATGGAGATGGCAAGCAAGAGGAAGAATCTAAATCCCCATGCAGAACACTCAAGTCAACTTTATTTTCCCCTTTGGATATATAATCATATTAGAGAAGAGGAAGATATAGATATAAAGGATTTGAGCGAAGAGGAAAAGCTAATAGTAAAGAAAATGATCATAGTTGCACTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCTTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAGATTTGAAAATACCTCCAAAACTTACTTTATTTCCTGATGATGAAATGAGTGTAGAGGATCAAACCGCCAGTTCTATCTAA 1851 0.3852 MWREAAWLMVLLLLFHQICAAKDDEEHLCPPSSCGKITNIKKPFRLQGDPENCGHKSYELGCENNVTVLYLLSAKYQVEAINYNNYTVRVVDPALQHHNCSSLPLHSFSRSNFSDTYYNYYSDLYQAGLSAYDNWESLIFEHIVFLNCKHSVKDNRKYVESGECVKWDSEGYAYAVGGDLKAEDFEVGCDVKLVAPTSLRSLNYDSYTAIHRGLAYGFEISWVKLACQKIICSQFNTYCYFNIKSQNLDCGGHWHLTAMAWAYKILFGWPFLIVVFILKWKKRHASTYENIENYLEQNHLVPIRYSYKEIKKMTEGFKEKLGEGGFGFVFKAKLRSGPSVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSRDENIDFSYEKVYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKISDFGLAKLYPIDNSFVTMTAARGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNPHAEHSSQLYFPLWIYNHIREEEDIDIKDLSEEEKLIVKKMIIVALWCIQLKPKDRPSMNKVVEMLEGDIEDLKIPPKLTLFPDDEMSVEDQTASSI* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1303 616 ProSiteProfiles Protein kinase domain profile. 315 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1303 616 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 262 608 - -
Vra6g1303 616 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 251 - -
Vra6g1303 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vra6g1303 616 Pfam Protein kinase domain 318 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1303 616 Gene3D Transferase(Phosphotransferase) domain 1 390 594 - -
Vra6g1303 616 SUPERFAMILY Protein kinase-like (PK-like) 299 586 IPR011009 -
Vra6g1303 616 SMART serkin_6 315 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1303 616 Gene3D Phosphorylase Kinase; domain 1 289 389 - -
Vra6g1303 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 262 608 IPR045874 GO:0004672
Vra6g1303 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 251 IPR045874 GO:0004672
Vra6g1303 616 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Vra6g1303 616 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1303 Vra-Chr6 24978530 24983397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1303 6 600 Receptor kinase-like Gene Family AT5G38260 36.953 4.97e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1303 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1303 - - vun:114195573 940.258