Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1298 ATGATTGGCCTGGATGATCGGCCTGGTGACTCGGATGATCGACTGGTGACTCGAATGATCGGCCTAATGGATTCTTTTGTTGACGATCCTCGGTCGCTGACCTTCGGAAAGGCCGGTTGGAATTCATTTGTTGACGATCCACGGTCGCCGACCTTCGAAAAGGTCGGCCGGGATTCTTTTGTTGACGATCCTCGGTCGTCGACCTTCGGAAAGGCCAACCAGGATTCGTTTGTTGACGATCCACGGTCGCCGACCTTCGGAAAGGCCGACCGGCATTCGTTTATTGACGATCCACGGTCGCCGACCTTCGGAAAGGCCGGCCGGCATTCTTTTGTTGACGATCCACGGTCGCCGACCTTCGGAAAGGCCGGCCGGGATTCTTTTGTTGACGGTTTGAGTTATGTAAAATATGTTTTTTTGACATTCTTGGGAAACAGGTGTGATGAACGAATCCAGAAAATTCAAACAATCGAAATGATGGAAGGAATCCTCATTTGTGTTGCCCCTCATTGTCTCAAATCTTTCTTAAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTTCGACCCAATGCTGATAAAGAAGATGGAAATGACTCAGAGGCACAGAGTGTTAGGCAATCTACTGCTTCAGATTCCACTGCTAGAGGTCCCCAAAGACCAGTTTTTTCTCCTAGTTCGAATTCACAGCAACATGATNTGGAAGACAAATCTCGTAGACAGACACCTAGGGAGCAACCACCTTCAAGGCAAACCCTGCAGCCAAAGCCACCACCATATTACGGTCAACAACACCCTTCAGATACCATGCCTGGCTCTGTTGGAGGCGGACAACAGGGTTTTCATCANCAAAGTTTTGACATGCAACAACCCCCACAAGAACCTTCCCAGTTTTCTGACAGGCAGCAAGCAGTGGGTCCAGAGACCCCATTTTCTGAGTATCCAACGATGCACCCCTCACAACCTTCCAATGTTCCCTCCCTGGTTACTTCAAACCCAATGTTGAACCCTCCTTTGCCATTAGGTTACCCCCCTTACCCAAATGAACGAGCTCAACCATTTTATGGTGCTCCCTATGATATGGCTAGGCCGGACTCAGGTGCTGATATGGGTGGGGAGCAGAGTTCACTATTGGGATTCCCTCAAGGTGCCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCAGTCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAACACAGGGTGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGCATACTTGCACCACAACCCATGCGCCTCCCACCACCACCTCCCCACCACCACATGTGA 1341 0.4966 MIGLDDRPGDSDDRLVTRMIGLMDSFVDDPRSLTFGKAGWNSFVDDPRSPTFEKVGRDSFVDDPRSSTFGKANQDSFVDDPRSPTFGKADRHSFIDDPRSPTFGKAGRHSFVDDPRSPTFGKAGRDSFVDGLSYVKYVFLTFLGNRCDERIQKIQTIEMMEGILICVAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNDSEAQSVRQSTASDSTARGPQRPVFSPSSNSQQHDXEDKSRRQTPREQPPSRQTLQPKPPPYYGQQHPSDTMPGSVGGGQQGFHXQSFDMQQPPQEPSQFSDRQQAVGPETPFSEYPTMHPSQPSNVPSLVTSNPMLNPPLPLGYPPYPNERAQPFYGAPYDMARPDSGADMGGEQSSLLGFPQGAPNGPNFPGNYPQSWNSGIGGVPFEQTQGGMVVDPREGKGILAPQPMRLPPPPPHHHM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1298 446 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
Vra6g1298 446 MobiDBLite consensus disorder prediction 394 411 - -
Vra6g1298 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 146 443 - -
Vra6g1298 446 MobiDBLite consensus disorder prediction 271 311 - -
Vra6g1298 446 MobiDBLite consensus disorder prediction 319 339 - -
Vra6g1298 446 MobiDBLite consensus disorder prediction 190 446 - -
Vra6g1298 446 MobiDBLite consensus disorder prediction 207 236 - -
Vra6g1298 446 MobiDBLite consensus disorder prediction 190 206 - -
Vra6g1298 446 MobiDBLite consensus disorder prediction 255 269 - -
Vra6g1298 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 146 443 IPR040383 GO:0016567|GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1298 147 408 C2H2 Transcription Factor Family AT5G01160 40.794 7.55e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1298 K15685 - gmx:100817582 516.538