Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1285 ATGCGATCACCGAATGAGATGAAAAAGAAACGAAAGGAAAGCGAGGCCAGTGAGCGGTCGAACTGGCCGGAGGTTTCGAGGTCGCATTACTCGCTGGAGCGTGGTTCGAGGTTTAACAAACGGTGCAGGGAAGACGCCGTAGCCACGGTTCCCACTCGCGGCGCGTCGTCACTTTTGACTGCGGCGCGGGGATTGAAGCGGAAAATAGGGTGCATTGACGATGCCACGCGGATGGGGAGGAGCGTGAGGATCGAGGACGATTACGTGATCGGAGGGAGCACGATCGGGCAGGGGAAGTTCGGGTCGGTGACGGTTTGCCGCGCACGTGCGGGGGGCGTGGAGTACGCGTGCAAGACGCTGAGGAAGGGGGAGGAGACGGTGCACCGCGAGGTGGAGATAATGCAGCACGTGTCGGGGCACCCTGGGGTTGTAACTCTGAAAGCGGTGTATGAGGATGCGGAGTGTTGGCACCTTGTGATGGAGCTGTGCTCCGGGGGAAGGTTGGTTGATAAGATGAGGGAGGGGCCGTGTTCGGAACACGTGGCCGCTGGGATACTGAAGGAGGTAATGATGGTGGTTAAGTATTGTCATGATATGGGCGTGGTGCATAGGGATATTAAGCCTGAAAATGTTCTGATTACTGGAACTGGGAAGATAAAGCTCGCTGATTTTGGCCTCGCCATCCGAATTTGTGAGGGTCAGAATTTGAAAGGTGTGGCTGGTAGCCCTGCATATGTTGCACCAGAAGTATTGTTGGGTAGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTTTTCTTCCATTTAAAGGCGATTCACAGGAAGCAGTTTTTGAGGACATAAAAAATTTCAAACTAGATTTCCAAACGGGGGTGTGGGAATCGATATCTAAACCAGCTCGAGATCTTGTTGGGAGAATGTTGACTAGGGATGTTTCAGCAAGGATAACAGCCGATGAAGTACTGAGTCATCCATGGATATTGTTCTATACGGCGCAAACATTGAACAAGCTGCCAGTTAAATCAAAAATGAAACCCCAAAATGCTGCTACTTGCCACAAGTTTGTTTCTGCACCTGAATCTGGGTTTGGAGGAAACAGGATGTATAATTGTTCCCTAAATGGTTCAAGCTCGTTTTCGTCCTCTGAAAGTGGCAATTCAGAATATGATGGTGACTGTGAGTGGATTGATGCCCTTACCACTGCGGTTTCACATGTGACGATATCCGAAGCTAAGAGGACCAAGCTGTGGGGTCCCACTGGTCCATTTGATTCACAAGGTTCATCTAACTTGAAGACTAACCTCTGTAAAGCATTCTGA 1347 0.5041 MRSPNEMKKKRKESEASERSNWPEVSRSHYSLERGSRFNKRCREDAVATVPTRGASSLLTAARGLKRKIGCIDDATRMGRSVRIEDDYVIGGSTIGQGKFGSVTVCRARAGGVEYACKTLRKGEETVHREVEIMQHVSGHPGVVTLKAVYEDAECWHLVMELCSGGRLVDKMREGPCSEHVAAGILKEVMMVVKYCHDMGVVHRDIKPENVLITGTGKIKLADFGLAIRICEGQNLKGVAGSPAYVAPEVLLGRYSEKVDIWSSGVLLHALLVGFLPFKGDSQEAVFEDIKNFKLDFQTGVWESISKPARDLVGRMLTRDVSARITADEVLSHPWILFYTAQTLNKLPVKSKMKPQNAATCHKFVSAPESGFGGNRMYNCSLNGSSSFSSSESGNSEYDGDCEWIDALTTAVSHVTISEAKRTKLWGPTGPFDSQGSSNLKTNLCKAF* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1285 448 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g1285 448 ProSiteProfiles Protein kinase domain profile. 89 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1285 448 SUPERFAMILY Protein kinase-like (PK-like) 83 373 IPR011009 -
Vra6g1285 448 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 21 440 - -
Vra6g1285 448 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Vra6g1285 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vra6g1285 448 CDD STKc_CAMK 87 335 - -
Vra6g1285 448 Gene3D Transferase(Phosphotransferase) domain 1 169 369 - -
Vra6g1285 448 SMART serkin_6 89 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1285 448 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 440 - -
Vra6g1285 448 Pfam Protein kinase domain 93 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1285 448 Gene3D Phosphorylase Kinase; domain 1 91 168 - -
Vra6g1285 448 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1285 Vra-Chr6 24381859 24385508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1285 73 336 EF-hand Containing Proteins AT4G04720 42.909 9.98e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra6g1285 Pkinase 4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1285 - - gmx:100809977 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1285 6 24381859 24385508 Vra6g1285 6 24381859 24385508 ECH
Vra6g1285 6 24381859 24385508 Vra5g0885 5 14865089 14867874 PCT