Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1277 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCCGACCCGCCGGTGCCAGCGCCGGTGGCAAGTTACGACTCGCTTGGAAACTCGGCGGCTCGCTCCAAAGTCGGCGGCGAGGGACGGAAGGGCGCGTTCGGCGCCGCCGCGGTACGCTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCTGCCTGCAACTGCCACCGGAACTTTCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTTCACCACCGAGCGCAGCCGCCGCCGCCGCTGCACCACCACCATCAGTTCTCCCCGTACTACCATCACCGAGTCCCGCAGCATCCCTCCGCCGGCGGCTACCTTCACCACCATCTCGCCACACCTCCAATGGCGCAGCACCGCCCGCTCGCCCTCCCGGCAGCGGCCTCCGGCGGAGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGCGGCGGAGGTGGCGGCGGCGGGGGATCCAAAAAACGGTTCCGAACAAAGTTCACGCAGGAACAGAAAGATAAGATGCTGGCATTCGCGGAACAGCTGGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAACAGTTCTGTGCTGAGACCAATGTGGAGAGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGATTACAACAGTAGAAGAAGGAGGTCATACATTCCCTTTCTCTTTTTCTGCATCCGTTTGATCATATTTGGGCTGAATGGATCGATGAACACTGTTAGCAGCAGAGTGGTACCATCACTGTTCTGTTCCATGGAGTTGTTGTAA 912 0.5943 MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNSAARSKVGGEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPSAGGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLDYNSRRRRSYIPFLFFCIRLIIFGLNGSMNTVSSRVVPSLFCSMELL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1277 303 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Vra6g1277 303 MobiDBLite consensus disorder prediction 165 199 - -
Vra6g1277 303 Gene3D - 182 257 - -
Vra6g1277 303 SUPERFAMILY Homeodomain-like 183 255 IPR009057 -
Vra6g1277 303 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Vra6g1277 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 43 257 - -
Vra6g1277 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 257 - -
Vra6g1277 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Vra6g1277 303 MobiDBLite consensus disorder prediction 1 39 - -
Vra6g1277 303 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 197 254 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1277 Vra-Chr6 23899523 23904528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1277 1 257 ZF-HD Transcription Factor Family AT4G24660 53.307 7.65e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra6g1277 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1277 - - gmx:100776421 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1277 6 23899523 23904528 Vra6g1277 6 23899523 23904528 ECH
Vra6g1277 6 23899523 23904528 Vra5g0941 5 15696987 15698603 PCT