Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1275 ATGCGCTACCTCACTTGCAACGCCGAGACAGCAATAGCCATATGCCACCCTCACTCCCCCAAGAAGAACAAAAAGCCCACAAGCCCAACACAGGCCCACACCGTGCCACACTTCGCCTACTCCGACATCCTTGCCGCCACCAACGCCTTCTCCGCCGACACCTTCTTAGGCAAAGGCAGCCACGGCAGAGTCTACAAAGCCACCCTCCACGGCGGCGCGCTCATCGCCGCAGTCAAAAAAACCAAAACTTCTAAGGAAATAGAAATTCTCTCCCACCTCAAAAGCCCGCGCTTGGTCAACCTAATTGGCTTCTGCAACGACCGAACTAACTGCAACAACAACAAACTCATTGTTGTGGAGTACATGCCCAACGGTTCGCTCCACGACCTTCTCCACTCCACCAAAACGGTTCGGCCTCCCGGTTGGACAGCGCGTGTCCGGTTCGCGGTTCACGTCGCGAAAGCCATTTGGTTTTTGCACTCGTCTGAACCGCCCGTTATTCACCGTGATATTAAATCGTCCAACGTGTTAATCGACGATAAGTGGAAAGCGCGACTCGGTGACTTCGGACTCGCGTTTCGAGGACACATGGCGGATTCACGCGTGCCGCCAGCGGGGACGTTAGGGTACCTCGACCCCTGCTATCTTGCGCCGGGGGACTTGAGTCCCAAGAGCGATGTCTTCAGTTTTGGAATCTTGCTGCTGGAGATAGCCAGTGGGAGGCACGCGATTGACGTGAGGCACAGTCCGCCGTCGGTGTTGGATTGGGCGATGCCGTTGGTCCGCCGTGGCCAGTTTCGGGATATTTGCGACCCGCGCATCGGGGCGCCGCCGAACATGGCAGCGTTCCACAGGATGATGGTGCTGGCCGCGAGGTGCGTGACGTCAAAGGTGGAGAGCCGGCCGACGATTGGGGAGGTGGTGGAATGTCTGACAGCGGTAAAGAAGAATTTTGACGCATCGCTGGTGTGGATGAGAATGATACGGCGCGTGGTAAAGGCGCGTGGCGTTGATTGGGACAGGAGTGAGGAATATATGAGAATAGTTAAAGGCGGGAGTAGAAACAGTAGAAGGAATGGGAAGGTATCTAGCATGTTGGGTGTACAGTATGAGAATGGACCCGCAAATCACACGGTTAGGTCAAGATCCGTTGGTTCTGGTTTTTTCGGGGAAATGAAAATTAACTCGGTTATGGAACGGTACCCTAACCAATTCGGGTTCAGGTATAGGAAGGTAAGGCTAAAGAGATCGATGTCTACGGGGCTTTTGAAACATTATGGTAATGAATCAAATACGTGTCATGAGAGGCATAACGATACTCATAGCAATGATTACGATAGAGTGAATTCCACAGAGATGGAACTTTCAAAGTTGGACTAG 1380 0.5319 MRYLTCNAETAIAICHPHSPKKNKKPTSPTQAHTVPHFAYSDILAATNAFSADTFLGKGSHGRVYKATLHGGALIAAVKKTKTSKEIEILSHLKSPRLVNLIGFCNDRTNCNNNKLIVVEYMPNGSLHDLLHSTKTVRPPGWTARVRFAVHVAKAIWFLHSSEPPVIHRDIKSSNVLIDDKWKARLGDFGLAFRGHMADSRVPPAGTLGYLDPCYLAPGDLSPKSDVFSFGILLLEIASGRHAIDVRHSPPSVLDWAMPLVRRGQFRDICDPRIGAPPNMAAFHRMMVLAARCVTSKVESRPTIGEVVECLTAVKKNFDASLVWMRMIRRVVKARGVDWDRSEEYMRIVKGGSRNSRRNGKVSSMLGVQYENGPANHTVRSRSVGSGFFGEMKINSVMERYPNQFGFRYRKVRLKRSMSTGLLKHYGNESNTCHERHNDTHSNDYDRVNSTEMELSKLD* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1275 459 MobiDBLite consensus disorder prediction 429 459 - -
Vra6g1275 459 Gene3D Transferase(Phosphotransferase) domain 1 122 328 - -
Vra6g1275 459 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vra6g1275 459 ProSiteProfiles Protein kinase domain profile. 50 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1275 459 SMART serkin_6 50 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1275 459 Pfam Protein kinase domain 53 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1275 459 ProSitePatterns Protein kinases ATP-binding region signature. 56 80 IPR017441 GO:0005524
Vra6g1275 459 SUPERFAMILY Protein kinase-like (PK-like) 24 312 IPR011009 -
Vra6g1275 459 PANTHER OS01G0253100 PROTEIN 1 349 IPR045271 GO:0004714|GO:0006468
Vra6g1275 459 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 349 - -
Vra6g1275 459 MobiDBLite consensus disorder prediction 425 459 - -
Vra6g1275 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1275 Vra-Chr6 23833006 23834852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1275 38 311 Receptor kinase-like Gene Family AT3G59420 39.519 1.71e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra6g1275 Pkinase 3.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1275 - - vra:106764162 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1275 6 23833006 23834852 Vra6g1275 6 23833006 23834852 ECH
Vra6g1275 6 23833006 23834852 Vra5g0943 5 15712984 15715027 PCT