Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1271 ATGGGAGAAGATTGTGGAGCCTGGATTCCGGAGCTGCATTTTGATTGGCAATCTCCCAATTTGAGCTCCTTCAATGCTGCACCCTTTGGCATGGGGAAGCAAAATGGTACAGCTGCAGCTATGAATCCAGTTGGCAACTCTGTTGCAAGAGATGCTACAATGCCAGCTTATGTGTCCTCTGGGCTGCCTCATATGCAGCCAGGACATTCTGGTGAACCTCATGGTTGGTTTTATTGTTTGCCTCGTTTCCGGCAGGGATGGCAGGGATTTACTACACCTGCTCGAAACTTCACTGCAGAGGAAAAACTCCCTGCTAGCCATGCAAAAGGTTTTGGGGAGGAAATTGCTCCTGTTGGGGGTTTCCCGCAGAAGCAATTCCTGGTTATTGATCAAACTGCTGATCAAACAACTCTGGTTTACAGTTCAAGATTTGGTCAGCCTGTTGAGTGTCTGACTTTGTGGGATTCAAAGCTGCATGGTTCTACAAATTTGAACAAGGGGAATGAATTGCTCTCATTGAGGAGAGATATGAATCATGTGGCTGGACTTGGACCAACTTTGGATGATAAAGTTGATGAAAATCAGGGAACTGATGATGACATTGAAAGTGAGATGCATGAGGACACAGAGGAAATCAATGCATTGCTTTACTCTGACAGTGATGGTTATTCCACTGAGGATGATGATGATGATAATGATGAAGTTACTAGCACAGGACATTCACCCAGTACAATGACCACTCACCATAATCAAGAAGGACCTGGTAGATTAATGGCTGAAGAAGTTGCTAGCTCTGTTGGAGAAACAAAGAAGAGAAAGCTGCAGGATGGGGCTTATGATGGTGATATGCAGTTCATGGACACTGCTAGTTCTCTGGATGGGAAAATACCCTTTGAAATTGAAGATGATGCAGAATCAAGATGCTCCAGTGTTGGCAACAATAGTAGAGGGTCAGGTGGAATGGGTTCTTGGTCGGGCAATAAAAAGATGAGAAAGGAGAAGATTCAAGATGTTCTGAGCATTCTGCAGTGCATAGTTCCTGGTGGAAAGGGCAAGGACCCAGTTGAACTTCTTGATGAAGCCATACGATGCTTGAAATCATTGAAACTCAAGGCCATAAAGCTTGGACTTGATGCCATATAA 1143 0.4453 MGEDCGAWIPELHFDWQSPNLSSFNAAPFGMGKQNGTAAAMNPVGNSVARDATMPAYVSSGLPHMQPGHSGEPHGWFYCLPRFRQGWQGFTTPARNFTAEEKLPASHAKGFGEEIAPVGGFPQKQFLVIDQTADQTTLVYSSRFGQPVECLTLWDSKLHGSTNLNKGNELLSLRRDMNHVAGLGPTLDDKVDENQGTDDDIESEMHEDTEEINALLYSDSDGYSTEDDDDDNDEVTSTGHSPSTMTTHHNQEGPGRLMAEEVASSVGETKKRKLQDGAYDGDMQFMDTASSLDGKIPFEIEDDAESRCSSVGNNSRGSGGMGSWSGNKKMRKEKIQDVLSILQCIVPGGKGKDPVELLDEAIRCLKSLKLKAIKLGLDAI* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1271 380 MobiDBLite consensus disorder prediction 304 329 - -
Vra6g1271 380 MobiDBLite consensus disorder prediction 307 322 - -
Vra6g1271 380 PANTHER TRANSCRIPTION FACTOR BHLH145 1 378 IPR037546 -
Vra6g1271 380 MobiDBLite consensus disorder prediction 183 255 - -
Vra6g1271 380 PANTHER TRANSCRIPTION FACTOR BHLH145 1 378 - -
Vra6g1271 380 MobiDBLite consensus disorder prediction 193 207 - -
Vra6g1271 380 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1271 Vra-Chr6 23589324 23593118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1271 123 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 34.252 4.87e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1271 - - var:108338245 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1271 6 23589324 23593118 Vra6g1271 6 23589324 23593118 ECH
Vra6g1271 6 23589324 23593118 Vra5g0945 5 15748041 15751281 PCT