Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1267 ATGGCACCCAGTTTTGATTGCTTTTCGAGCCTTCTCTGTGCGGAAGATAATATTATTTTTGACGAAAATGATCGGGGAGGTTTGGTGGAGGAGTTGGAGGACACGTGGGAGCATCCTATATATGATCGAAATCATAGTCAAATTGAGAACTTGGATGTCCAATATGTGTCGTTTCCATTGCCGAGTGAGGAGTGTTTGAGACTAATGATGGAAACAGAATTGCATCACTTGCCTAATGGTGATTACGTTAATAGGCTGAGGAGTGGGGATTTGGACATTGGGGCCAGAACAGAGGCCATTGATTGGATTGAAAAGGTCCGAGAGCACTTTCGTTTTGGACCTCTCTGTGCGTATTTATCTATAAATTACTTGGACCGCTTCCTCTCTGTTTATGAATTACCAAAGCAACGAGTTTGGACAATGAAATTGTTGGCTGTAGGTTGCATATCTTTGGCAGCCAAAATGGAAGAGACTGATGTTCCTACATCTCTTGATTTGCAGGTGGGTGAATCTAAGTATATATTTGAGGCCAAAACAATTCAGAGAATGGAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCAATTACCCCATTTTCCTTCATTGACTATTTCCTTCAGAAGATCAATGACGATGAAGCTTCAATTGGAGCTTCAATTTTGCAATCCTCCGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGACGGCCAAACAGTTCAAACAGAGAAAGCAAGTTCTGATCTGATTCAGCCTGTAGAAAAGGAGAGGGTGTTGAAGTGTGTTAAAATGATCCAAGCTCTGTCATCAAACAATGGTTCTGCTAAGGATTTCATTCCTTCTGTTTCTGTCCCTAGCGTGCCTGAAAGCCCAATAGGGGTGTTGAACAATGCATGTTTCAGCTACAAAAGTGATGAACCAAATGCTGCTCCTTGTGCAAATTCTTCACATACTGATACTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAG 1068 0.4232 MAPSFDCFSSLLCAEDNIIFDENDRGGLVEELEDTWEHPIYDRNHSQIENLDVQYVSFPLPSEECLRLMMETELHHLPNGDYVNRLRSGDLDIGARTEAIDWIEKVREHFRFGPLCAYLSINYLDRFLSVYELPKQRVWTMKLLAVGCISLAAKMEETDVPTSLDLQVGESKYIFEAKTIQRMELLVLNTLKWRMQAITPFSFIDYFLQKINDDEASIGASILQSSELILSTVRGIDFIEFRPSEIAAAVAISVVGDGQTVQTEKASSDLIQPVEKERVLKCVKMIQALSSNNGSAKDFIPSVSVPSVPESPIGVLNNACFSYKSDEPNAAPCANSSHTDTPDAKRRKLDKTFGE* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1267 355 SUPERFAMILY Cyclin-like 58 195 IPR036915 -
Vra6g1267 355 CDD CYCLIN 96 188 IPR013763 -
Vra6g1267 355 MobiDBLite consensus disorder prediction 328 355 - -
Vra6g1267 355 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 349 - -
Vra6g1267 355 Pfam Cyclin, C-terminal domain 198 296 IPR004367 -
Vra6g1267 355 MobiDBLite consensus disorder prediction 340 355 - -
Vra6g1267 355 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Vra6g1267 355 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vra6g1267 355 SMART cyclin_7 101 189 IPR013763 -
Vra6g1267 355 PANTHER CYCLINS 1 349 IPR039361 -
Vra6g1267 355 SMART Cyclin_C_2 198 312 IPR004367 -
Vra6g1267 355 SUPERFAMILY Cyclin-like 180 288 IPR036915 -
Vra6g1267 355 Gene3D - 79 196 - -
Vra6g1267 355 Gene3D - 67 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1267 Vra-Chr6 23485998 23488974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1267 26 334 Core Cell Cycle Gene Families AT2G22490 46.688 9.66e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1267 K18810 - gmx:100803873 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1267 6 23485998 23488974 Vra6g1267 6 23485998 23488974 ECH