Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1265 ATGATGTGGGAATGGGGCGATTACGAAGACGCCATCCCAGAATCCGACCAACCCGAACCCGATTCTCATCTCAACTTCGATTTCTTCTCCACCCTCGCCAAACCCAAGGATTATTATAAGATACTGGAAGTGGATTATGATGCTACGGACGATGATATTCGCTCCAATTACATTCGTCTCGCTCTGAAGTGGCACCCGGACAAGCAGAAAGCCCAGGATTCTACTACCTCGCGATTCCAAGACATAAACGAGGCCTACCAGGTTTTGAGTGATCCAGTCAAAAGGAGGGAATATGACATAAACGGAATGCGTTATGAATATGATTACAATATCATTGATTATCTTAATCGTTACAAGGGCCTTATCTTGACTTGCAATGGCCTTGGCATAAAGCATTCGATATGGTAA 408 0.4436 MMWEWGDYEDAIPESDQPEPDSHLNFDFFSTLAKPKDYYKILEVDYDATDDDIRSNYIRLALKWHPDKQKAQDSTTSRFQDINEAYQVLSDPVKRREYDINGMRYEYDYNIIDYLNRYKGLILTCNGLGIKHSIW* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1265 135 ProSiteProfiles dnaJ domain profile. 37 102 IPR001623 -
Vra6g1265 135 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g1265 135 ProSitePatterns Nt-dnaJ domain signature. 79 98 IPR018253 -
Vra6g1265 135 PRINTS DnaJ domain signature 39 57 IPR001623 -
Vra6g1265 135 PRINTS DnaJ domain signature 57 72 IPR001623 -
Vra6g1265 135 PRINTS DnaJ domain signature 74 94 IPR001623 -
Vra6g1265 135 Pfam DnaJ domain 37 99 IPR001623 -
Vra6g1265 135 CDD DnaJ 37 91 IPR001623 -
Vra6g1265 135 SUPERFAMILY Chaperone J-domain 32 121 IPR036869 -
Vra6g1265 135 Gene3D DnaJ domain 29 114 IPR036869 -
Vra6g1265 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 135 - -
Vra6g1265 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 135 - -
Vra6g1265 135 SMART dnaj_3 36 94 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1265 Vra-Chr6 23367362 23381977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1265 30 99 C2H2 Transcription Factor Family AT1G74250 41.333 7.73e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1265 - - var:108338470 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1265 6 23367362 23381977 Vra6g1265 6 23367362 23381977 ECH