Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1251 ATGTTCGCTGAGACAGAACTTCTCTTCCCATATTTTCGAAATTTCTCTCAAGAGTTTCAACAACTTGAGGAGTACTGCATGACCCAAAAGTCCTGTGCTTCAATGAATGACCTCGTTCAAACTTCTGCAATCTCAGAATATGATTTGTTAATAGAGGGAGATCTGTTCAAAGCACCTGAACCTATTCTTGAAGAACCAGCAATAGACCTCGATCCTGTGCAAGCAGCCATCTCAATGATATCTTGCGGGGAGGATGTCCCCTCACAGGGTCTAAAATCATCAGATATTAATATACTTCAAAATGAACAGCTTCTGAGTGAGGTATTCTACGAGTGCAAAAAAGATCTCTTAGAAAAGACAGTGATAGAATCACCACTCAATGATATTATGGAAATCAAGGTTCCACCACTGAACATTGATGATAATTCAATTGAAGTAAACAAATCACTTCTTCACACTACTCTACCAAAGAGTATCAGTTCAGGAAGTCTGAGTTCAATGGACTGGATGCATGGAGCTGCAATGAAGCCAACTTTTCTGGATTTTCCAGGATTAGATTTCAATGCAGTTTATGGCATGCGGAGAGCATTTAGCGAAGGAGATATAAAGACTCTTAATACTGGCAACACGAGCTATTGCCAATCTCCACAGGAGAGACCTTTGTTTCTAGGCAATTGCACTAGTGAAGAACGTCAAGAAAAGCTCTCCAGATACAGAAACAAGAAGACAAAGAGAAATTTTGGGAGGAAAATTAAGTATGCTTGCAGGAAGGCACTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAAGACAGAAGAGTTAGATGTGAAGAGGTAA 843 0.4009 MFAETELLFPYFRNFSQEFQQLEEYCMTQKSCASMNDLVQTSAISEYDLLIEGDLFKAPEPILEEPAIDLDPVQAAISMISCGEDVPSQGLKSSDINILQNEQLLSEVFYECKKDLLEKTVIESPLNDIMEIKVPPLNIDDNSIEVNKSLLHTTLPKSISSGSLSSMDWMHGAAMKPTFLDFPGLDFNAVYGMRRAFSEGDIKTLNTGNTSYCQSPQERPLFLGNCTSEERQEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEELDVKR* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1251 280 Pfam CCT motif 231 273 IPR010402 GO:0005515
Vra6g1251 280 PANTHER CCT MOTIF FAMILY PROTEIN 26 279 - -
Vra6g1251 280 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 279 - -
Vra6g1251 280 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1251 Vra-Chr6 22761020 22764873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1251 227 277 C2C2-CO-like Transcription Factor Family AT5G57660 49.020 8.58e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra6g1251 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1251 - - gmx:100814332 414.461