Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1247 ATGAACGCGCTTACCCTACTCGAAAACTCGCCATTTCTCAAAACGAACGGAGCAAGAACCAAGAGATGCAATGACAGCGACAACCACACCGACAACGACAACGAAGGCGAACAGGGTAAGGAGAAGGACCAACGAGAGTTAGATGGCGAACACAAAGTTATTAAACAAAAACCAAACAGTTATATATACGATGTGCTCATCAACTTCACCGGAGAAGACATCCACAGATTATTTGTTTCTCATCTCAATTCTGTTCTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCACAACGCAGTAAAGTCAACTCACATCCAAGAACCTATTCTCAGCCACTGTCGTGTAGCAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAACTGGCACGAAACTTATTTCCAACATGTTCTGCCAATATATTATGAAATCCAGCCATCTGATGTACGTCTTCAAAAAGGTGACTTTGGAAAAGCCTTGGAGGAAACGGCACAACAAACATTTTCAGGACAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGAGAAAATTGTTAAGAGCGTTGTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCTGTTGGATTACAATCACACGTGGAAAATCTGATTCGAACTATCAAAAATAAATCCACGGAAGTTTGTATGATATGGATACATGGAGATGAAGGATCTGGTAANACGACTCTTGCCAAAGCGATCTACAATCAAATTCATTGGACGTTCAAGGACAAAAGTTTCATTGAAAATATTTCACGTGTTAGCGGAATAAGAGGGCTTCTTCGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAACAAAAAGTGGAGATTCCTAGCGTTGATGTGGGAAGAACTATGATTCGGGAAAGACTTCTAGGAAAAAGGGTTCTCATTGTACTTGACGATCTTTTCTACTCTAATTTATTCGACCTAAGGGATTGTACTAAATGGTTAGTTGAAGGAACTGTTATAATTGTTACATCAACATATGGAATAGGGCTGAGAGATCAAGCTAATTCTGTCTTTCGGGTAGAGCGAATGAACGAAGAGGAGTCCCTTGAGCTTGTTAGTTGGCATGCATTTAGAGAAGCAAAACCAAAAGAAGAATACAAAGACCTTGCAAGAAAAGTAGTTAGTTATTGTGAAGGACTACCACTAGCTCTTGAAGTCGTTGGAAGTAGTTTATTTGAAAAGACGAAAGAAGAATGGAACAATGTATTGTTTGCGATAGATGGCTTGCGTCCTGATCCAGAGATAATAAAAGTAAGCATCGAAGGTTCACTGAATGAAATGGAAAAAGATATATTCCTTGATATATGTTGTTTCTTTGTTGGTAAGAACAGAGCCTATGTTAGGAAGATCCTAAATGGCTGTGGGGTAGACGCTGATATTGCAATAAGAGTTCTCATCCAGCATAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAGAAATCGGATTAAGAATTATTCGTGAAAATTATGGAAAGGATCTTGGGAACAGGCGACTGTGGTTTGATAAGGATACAAAATATGGGACAGAAGCCCTGCAGTGGTTGCCTGTCAATGCCTTCGTTAATGTACAACAGACTGTAAATTCTGAGTACCTTCTCAAGAAACTAAGATGGATCAGTTGGCATGGGCTTTCTTCAGAACGTCTACCTAACAACTTTTATGAGCATGATGCAATAGCTATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTATGACATCGCTAAAAGTCCTTAACCTCAGTCACTCCAAGCATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACATCTCATTTTGAAATATTGTTCGAGATTGAGCAAAGTACACCAATCTATTGGATCACTCAACAGTCTTATACTCCTAAATGTGAAATACTGTACAAGTCTATACAATCTTCCAACAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTGACATAATGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAAGAAGCGCCCTTTTCAATTGTAAGCTCAAAAAGAATTGGATATATATCCCCTACGTGGATTTGA 2289 0.3888 MNALTLLENSPFLKTNGARTKRCNDSDNHTDNDNEGEQGKEKDQRELDGEHKVIKQKPNSYIYDVLINFTGEDIHRLFVSHLNSVLSTVGLTTFLHHHNAVKSTHIQEPILSHCRVAIVVFTQTYSQSAWCLHQLQQIINWHETYFQHVLPIYYEIQPSDVRLQKGDFGKALEETAQQTFSGQELEHGMSRWSHALTKAANFFGWDESNYRSDAELVEKIVKSVVNLPVLSATKFPVGLQSHVENLIRTIKNKSTEVCMIWIHGDEGSGXTTLAKAIYNQIHWTFKDKSFIENISRVSGIRGLLRLQEQLLLDVLKQKVEIPSVDVGRTMIRERLLGKRVLIVLDDLFYSNLFDLRDCTKWLVEGTVIIVTSTYGIGLRDQANSVFRVERMNEEESLELVSWHAFREAKPKEEYKDLARKVVSYCEGLPLALEVVGSSLFEKTKEEWNNVLFAIDGLRPDPEIIKVSIEGSLNEMEKDIFLDICCFFVGKNRAYVRKILNGCGVDADIAIRVLIQHNLIKINKNNKFGMHPLLQEIGLRIIRENYGKDLGNRRLWFDKDTKYGTEALQWLPVNAFVNVQQTVNSEYLLKKLRWISWHGLSSERLPNNFYEHDAIAIDLKRSLLRFLWKTPQVMTSLKVLNLSHSKHLTTTPDFTGLPSLEHLILKYCSRLSKVHQSIGSLNSLILLNVKYCTSLYNLPTEIYELKSLRTFILSGCSKIDIMDKDIAKLESLITLIAENTAVKEAPFSIVSSKRIGYISPTWI* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1247 762 Gene3D Ribonuclease Inhibitor 564 750 IPR032675 -
Vra6g1247 762 SMART till_3 62 202 IPR000157 GO:0007165
Vra6g1247 762 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 66 759 - -
Vra6g1247 762 Gene3D - 225 379 IPR027417 -
Vra6g1247 762 Pfam NB-ARC domain 240 451 IPR002182 GO:0043531
Vra6g1247 762 MobiDBLite consensus disorder prediction 16 50 - -
Vra6g1247 762 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 66 759 IPR044974 GO:0006952
Vra6g1247 762 SUPERFAMILY L domain-like 582 747 - -
Vra6g1247 762 SUPERFAMILY "Winged helix" DNA-binding domain 462 559 IPR036390 -
Vra6g1247 762 SUPERFAMILY Toll/Interleukin receptor TIR domain 58 205 IPR035897 -
Vra6g1247 762 Pfam TIR domain 63 234 IPR000157 GO:0007165
Vra6g1247 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 482 IPR027417 -
Vra6g1247 762 Gene3D - 390 467 IPR042197 -
Vra6g1247 762 Gene3D - 57 224 IPR035897 -
Vra6g1247 762 PRINTS Disease resistance protein signature 259 274 - -
Vra6g1247 762 PRINTS Disease resistance protein signature 334 348 - -
Vra6g1247 762 PRINTS Disease resistance protein signature 425 439 - -
Vra6g1247 762 PRINTS Disease resistance protein signature 631 647 - -
Vra6g1247 762 ProSiteProfiles TIR domain profile. 61 228 IPR000157 GO:0007165
Vra6g1247 762 MobiDBLite consensus disorder prediction 20 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1247 Vra-Chr6 22526341 22532446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1247 51 748 WRKY Transcription Factor Family AT4G12020 27.345 3.87e-58 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1247 - - var:108346736 954.125