Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1246 ATGAAGCCATCTTCTCTTTGGTTGCTTGCTTTTTGGTTTATATATGTTCCCCTGTTTTTCCACTTTAAATGCAACCCCAAACACAATGTTTTTGCTTTAGAAAATGAGATCGATCATATGGCACTTATCAAATTCAAAGAATCAATATCGACTGACCCAAATGGGATCTTGCTTTCTTGGAATACTTCTACTTACTTTTGTAATTGGTATGGAATCACATGCCATCCCACACTTCCAAGAGTTACTGAGCTGAACTTGCAAGGGCACAAGTTGAAAGGGTACATATCTCCTCACATAGGTGAGGTACCCACTGAAGGTGTCTTTCGGAATGTAAGTGCATTGGGGGTGATTGGAAACAGTAAGCTTTGTGGAGGTATTTCTGAATTGCATCTGCCACCATGCCCTGTTAAAATTAAGAAACATGCAAAACACCACAAGTTCAGATTGATAGTGGTGACATTAAGTGTAGTTGTTTCTCTCATTGTACTATTATCTGCCTTAACTATCTATTGGTCGAGGAAAAAGGGAAAGAAACCTTCCCTTAATTCATCAACAATTCACCAATTGGCTAAAGTTTCTTACCAAAGCTTGTACAATGGAACTGATGGGTTCTCAACTACAAACTTGATAGGGAGTGGGAATTTCAGTTCTGTATACAAAGGAACTCTTGAGCTCGAAGACAGAGTTGTAGCAGTAAAGGTTCTAAACCTGCAAAGAAAAGGAGCTCACAAGAGCTTCGTGGCAGAATGTAATGCACTAAAAAATATTAAGCATCGAAATCTTGTTCAGATTTTGACATGTTGTTCCAGCACAGATTATAAAGGTCAAGAATTCAAAGCTTTGATCTTTGAGTACATGAGAAATGGAAGCCTGGAGCAATGGTTGCATCCTACCACAACAAGTGTTGAGCATCCAAGAACATTGAGCCTTAAACAAAGATTAAGTATAATGATTGACGTAGCTTCTGCATTACAATATCTTCATCATGAATGTGAGCAGTCGATCATTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGATTGCTCATGTAAGTGATTTTGGCATAGCAAGACTTCTCTCAACAATCCAAGCTATCACCTCCAAACAATCAAGTACACTTGCGATAAAGGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTGCTGAAGTGTCAACTTCTGGCGACATGTACAGCTTTGGAATTCTTATGCTGGAAATGCTTACTGGGAGAAGACCTACAGATGAAATGTTTGAAGATGGTCAAAATATTTGTAACTTTGTTACAATTTCATTTCCCAGTAAACTTTTTCAAATTTTGGATCGGCGACTTATTCCAATTGAGGAAAATGATCGGAATCTTAATCCAAATATTGAGAAGTGCTTAGTTTCACTTTTTAAAATTGGACTTGCCTGTGCTGTGGAATCACCAAAAGACAGAATGGATGTGGTTGATGTCAGCAGGGAGCTTCATCGAATTCAAAATGCCTTTTTTGGTAGAGGCTCTGTTTTGGGAAATGATTCTTCAATCATCTTATTGAGTGAAGGTGTTGATAACAGTGAAGGTTGA 1587 0.385 MKPSSLWLLAFWFIYVPLFFHFKCNPKHNVFALENEIDHMALIKFKESISTDPNGILLSWNTSTYFCNWYGITCHPTLPRVTELNLQGHKLKGYISPHIGEVPTEGVFRNVSALGVIGNSKLCGGISELHLPPCPVKIKKHAKHHKFRLIVVTLSVVVSLIVLLSALTIYWSRKKGKKPSLNSSTIHQLAKVSYQSLYNGTDGFSTTNLIGSGNFSSVYKGTLELEDRVVAVKVLNLQRKGAHKSFVAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPTTTSVEHPRTLSLKQRLSIMIDVASALQYLHHECEQSIIHCDLKPSNVLLDDDMIAHVSDFGIARLLSTIQAITSKQSSTLAIKGTVGYAPPEYGMGAEVSTSGDMYSFGILMLEMLTGRRPTDEMFEDGQNICNFVTISFPSKLFQILDRRLIPIEENDRNLNPNIEKCLVSLFKIGLACAVESPKDRMDVVDVSRELHRIQNAFFGRGSVLGNDSSIILLSEGVDNSEG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1246 528 SUPERFAMILY L domain-like 37 101 - -
Vra6g1246 528 PANTHER LRR RECEPTOR-LIKE KINASE 24 100 - -
Vra6g1246 528 PANTHER LRR RECEPTOR-LIKE KINASE 100 505 - -
Vra6g1246 528 SMART serkin_6 204 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1246 528 Gene3D Phosphorylase Kinase; domain 1 184 285 - -
Vra6g1246 528 PANTHER OS04G0122200 PROTEIN 24 100 - -
Vra6g1246 528 PANTHER OS04G0122200 PROTEIN 100 505 - -
Vra6g1246 528 SUPERFAMILY Protein kinase-like (PK-like) 178 496 IPR011009 -
Vra6g1246 528 Pfam Leucine rich repeat N-terminal domain 41 74 IPR013210 -
Vra6g1246 528 ProSiteProfiles Protein kinase domain profile. 204 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1246 528 Pfam Protein kinase domain 206 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1246 528 Gene3D Ribonuclease Inhibitor 37 124 IPR032675 -
Vra6g1246 528 Gene3D Transferase(Phosphotransferase) domain 1 286 505 - -
Vra6g1246 528 ProSitePatterns Protein kinases ATP-binding region signature. 210 233 IPR017441 GO:0005524
Vra6g1246 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1246 Vra-Chr6 22509442 22513087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1246 100 504 Receptor kinase-like Gene Family AT3G47570 47.356 1.60e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra6g1246 Pkinase 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1246 - - ccaj:109792361 629.787