Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1245 ATGGATATCGCCTCCTCATCATACAAACTACCACGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATCCACAGAAAATTTGTTTCTCATCTCAATTCTGCCTTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCCCAATGCAGTAAACACAACTCACATCCAACAACCTATTCTCAGCCACTGTCGTGTAGCAATTGTTATTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCTACAAATCATCAAATGGCACCAAACTTATTGCAGACATGTTCTGCCTGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGCCTTGAAGGAAACTGCACAACAAACATTTTCAGGACAAGAACTGGATCATGGCATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAGTTACCGGAGTGATGCTGAACTAGTGGACAAAATTGTAAAGAGCGTTGTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAGATCTGATTCGAACTATCAAAAATAAATCCACTGAAGTTTGTATTATAGAGATATTAGGAGAGCAGGGATCTGGTAAAACAACTCTTGCCAAAGCGATCTATAATCAAATTCATTGGACATTCAAGGAGAAAAGTTTCATTAAAAATACTTCACATGTTACCGGAATAAGAGGGCAACTTCGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAACAAAAAGTGGAGATTCCTAGCGTTGATGTGGGAAGAACTATGATTCGAGAAAGACTTTTAGGAAAAATGGTTCTCATTGTACTTGACGATGTTAATTACTTTACTTTATTTGATGTATGTGATTGTCGTAAATTGTTAGTTGAAGGAACTGTTATAATCGTTACATCAACATATGGAATACGGTTGGGAGATCAAGCTAATTCTGTCTTTTGGTTAGAGGGAATGAACACAGAAGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACGAAGACCTTGCAAGAAGAGTTGTTAGTTATTGTGAAGGACTACCACTCGCTCTTGAAGTCGTTGGAAGTAGTTTATTTGAAAAGACCAAAGAAGAATGGAACAATTTATTGTTTGCGATATATGGCATGCGTTGTGTTCCAAAGATAATAAAAATAAGCATCGAAGGTTCACTGAATGAAATGGAAAAAGATATATTCCTTAATATATGTTATTTCTATGTTGGTAAGAGCAGAGGCTATGTTAGGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTCATCCAACGTAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATGCATCATTTGCTACAAAACATCGGAATGAAAATTATTCATGAAAATTCAGGAAAGGATCTTGGGAAGAACAGGCGACTGTGGTTTGATAAGGATGCAAAATATGTAAGAACATTCTTTACATGTGGTTTGAAACAGGGGACAGAAGCCATGCAGTGGTTGCCTGTCAATGCCTTCGTTTTGAGATCGCTAAAAGTCCTTAACCTCAGTCATTCCGAGTATTTAACTACAACCCCTGACTTTACAGGATTACCAAGTCTTGAACAGCTCATTTTCAAATATTGTTCGAGATTGAGCAAAGTACACCAATCTATTGGATCACTCAACAGTCTTATACTGCTAAATTTGAAATACTGTACAAGTCTAAACAATCTTCCAACTGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTTTGTCTGGTTGTTCCAAGATTGACATAATGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCCCTAAGTGGATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCCCCAATAATGAATCCCATCTCTTATATTCATTCGCTTTGCATGGATACTGAGGATAATACGATTGATATTGCACCATTGCTTAGCACCCTTTCAAATATTCGAATTCGGAAAGCTCTTTATGGTCTCAAATAG 2190 0.3731 MDIASSSYKLPRKYDVLINFTGEDIHRKFVSHLNSAFSTVGLTTFLHHPNAVNTTHIQQPILSHCRVAIVIFTQTYSQSAWCLNQLLQIIKWHQTYCRHVLPVYYEIQPSDVRLQKGDFGKALKETAQQTFSGQELDHGMSRWSHALTKAANFFGWDESSYRSDAELVDKIVKSVVNLPVLSATKFPVGLQSHVEDLIRTIKNKSTEVCIIEILGEQGSGKTTLAKAIYNQIHWTFKEKSFIKNTSHVTGIRGQLRLQEQLLLDVLKQKVEIPSVDVGRTMIRERLLGKMVLIVLDDVNYFTLFDVCDCRKLLVEGTVIIVTSTYGIRLGDQANSVFWLEGMNTEESLELLSWHAFREPKPKEEYEDLARRVVSYCEGLPLALEVVGSSLFEKTKEEWNNLLFAIYGMRCVPKIIKISIEGSLNEMEKDIFLNICYFYVGKSRGYVRKILNGCGVDADIGIRVLIQRNLIKINKNNKFGMHHLLQNIGMKIIHENSGKDLGKNRRLWFDKDAKYVRTFFTCGLKQGTEAMQWLPVNAFVLRSLKVLNLSHSEYLTTTPDFTGLPSLEQLIFKYCSRLSKVHQSIGSLNSLILLNLKYCTSLNNLPTEIYELKSLRTFILSGCSKIDIMDKDIAKLESLITLIAENTAVKEVPFSIVSSKSIGYISLSGFEGLSHNLFPSIIRSWMSPIMNPISYIHSLCMDTEDNTIDIAPLLSTLSNIRIRKALYGLK* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1245 729 Gene3D - 174 326 IPR027417 -
Vra6g1245 729 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 540 677 IPR044974 GO:0006952
Vra6g1245 729 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 515 IPR044974 GO:0006952
Vra6g1245 729 PRINTS Disease resistance protein signature 210 225 - -
Vra6g1245 729 PRINTS Disease resistance protein signature 285 299 - -
Vra6g1245 729 PRINTS Disease resistance protein signature 376 390 - -
Vra6g1245 729 PRINTS Disease resistance protein signature 538 554 - -
Vra6g1245 729 Gene3D - 11 173 IPR035897 -
Vra6g1245 729 Pfam NB-ARC domain 191 402 IPR002182 GO:0043531
Vra6g1245 729 Gene3D - 341 418 IPR042197 -
Vra6g1245 729 SUPERFAMILY "Winged helix" DNA-binding domain 412 512 IPR036390 -
Vra6g1245 729 CDD AAA 213 325 - -
Vra6g1245 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 432 IPR027417 -
Vra6g1245 729 Pfam TIR domain 13 180 IPR000157 GO:0007165
Vra6g1245 729 Gene3D Ribonuclease Inhibitor 520 721 IPR032675 -
Vra6g1245 729 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Vra6g1245 729 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 540 677 - -
Vra6g1245 729 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 515 - -
Vra6g1245 729 SUPERFAMILY L domain-like 533 685 - -
Vra6g1245 729 SMART till_3 13 153 IPR000157 GO:0007165
Vra6g1245 729 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1245 Vra-Chr6 22498528 22501008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1245 525 655 WRKY Transcription Factor Family AT4G12020 32.824 1.90e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1245 - - var:108346736 976.467