LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1233	ATGGAGGCCAAGTTGGGCGGCGGCGCCGGCGTTATGGCGGCTACCTTCGACGAATTCAAATGGATCTCCTTTATGTTCGATCACGACATAAACGACGACATCAAACCCTGCAAGCTCGACCCCTTCACCGGAGCTTCTGGTCACCTCAACGACGCTTTCGAAAATCTGGATGCAGTAACTGGATTTTCAAGTTGTGGTGGAATAACAGATGGTAGGGTCTTCCACTCCCAAAACCTGGCTCCCGTCCAATCCGCCATCTCTGCAACTATTGATTCTCAGTCTTCCATTTGTGGTACCCCAGTTTCTGGTAACAAACCAAATGGAAGAGATAACGAAGTGAAAGGGGCGACCACAACAAGTGGTTCCTCACGTGACCCATCTGATGAAGATGATGAAGCAGGGCTTTGTGAACAAAGCACAAACGCTGTTGACACCAAACGTCTTAGAAGGAAGGATTCTAATAGAGAGTCTGCAAGGAGGTCAAGAAGAAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTTGAACGGCTGAGGCAGGAAAACTCACACCTATTCAAGCAGCTTAGGGATGCAAGCCAACAATTCCGTGATGCGGATACCAATAATCGAGTTCTAAAATCAGATGTCGAAGCTTTAAGAGCTAAGGTAAAGTTAGCTGAGGACATGGTGAGAAGAGGCACAATTCCACCATTGAACAACCAGATTCTTCCAAATCTGAGTGAATTGAGCAATATGAATAATCTGCGTGGCATGGCACATGTTTCACCAACCATCACTGTGCATGGGAATGATGGTGCTTCGTATGGTGCTGGAATCACACTCAGTGGACATAACTCACCTCTTGAGCTTGGAAACTTGGACATATCTTGCACTGATTTCAATACTGATAATGCTGTGAGCTCTATCACTACCATGTGGCCTTAA	930	0.4667	MEAKLGGGAGVMAATFDEFKWISFMFDHDINDDIKPCKLDPFTGASGHLNDAFENLDAVTGFSSCGGITDGRVFHSQNLAPVQSAISATIDSQSSICGTPVSGNKPNGRDNEVKGATTTSGSSRDPSDEDDEAGLCEQSTNAVDTKRLRRKDSNRESARRSRRRKQAHLADLEWQVERLRQENSHLFKQLRDASQQFRDADTNNRVLKSDVEALRAKVKLAEDMVRRGTIPPLNNQILPNLSELSNMNNLRGMAHVSPTITVHGNDGASYGAGITLSGHNSPLELGNLDISCTDFNTDNAVSSITTMWP*	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1233	309	Pfam	bZIP transcription factor	145	192	IPR004827	GO:0003700\|GO:0006355
	Vra6g1233	309	PANTHER	BASIC LEUCINE ZIPPER 9	49	309	-	-
	Vra6g1233	309	SUPERFAMILY	Leucine zipper domain	146	196	IPR046347	GO:0003700\|GO:0006355
	Vra6g1233	309	SMART	brlzneu	142	206	IPR004827	GO:0003700\|GO:0006355
	Vra6g1233	309	PANTHER	BASIC LEUCINE ZIPPER 63	49	309	-	-
	Vra6g1233	309	Gene3D	-	145	201	-	-
	Vra6g1233	309	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	144	207	IPR004827	GO:0003700\|GO:0006355
	Vra6g1233	309	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	149	164	IPR004827	GO:0003700\|GO:0006355
	Vra6g1233	309	Coils	Coil	204	224	-	-
	Vra6g1233	309	Coils	Coil	162	196	-	-
	Vra6g1233	309	CDD	bZIP_plant_GBF1	147	198	IPR045314	GO:0003700\|GO:0006355
	Vra6g1233	309	MobiDBLite	consensus disorder prediction	91	167	-	-
	Vra6g1233	309	MobiDBLite	consensus disorder prediction	91	123	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1233	Vra-Chr6	22056898	22061393	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra6g1233	91	309	bZIP Transcription Factor Family	AT5G24800	51.082	2.94e-56	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vra6g1233		bZIP_1	6.6e-11	CL0018