Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1230 ATGGTTCAGAAAAGACCGTATTATTGCCTTGTTATGCTCCTTGTGTTGGGGATTTGTTTTGAGCCATCGTTGGGAGACACAAATGCTCAAATTTTGATGAGGTTCAAAGGTTCCTTGTCAAATGGGAAAGCCTTAAACAATTGGGGGAGCGAGTCTAGTTTATGTAGCTGGACTGGCTTGTTATGCCGCAAAAACCAAACATTTTATGGCTTGAGACTAGAGCATATGGAACTGGGTGGGAAGATTGATATAGAAACCTTGGTTGAATTGCCAACTTTGGTAAGCTTTAGTGTCATTAACAATACATTTGAGGGTCCGATGCCGGAGTTCAAAAAACTTGTGAGTTTAAGGGCATTGTTTCTGTCCAATAACAAGTTTTCCGGTGATATTCCGGATGATGCTTTTGAAGGCATGAGAAAACTGAAGAGGGTATTCTTGGCAGAAAATGGCTTCACTGGTCCTATTCCAAAGTCACTTGCTAACTTGCCAAGACTCTTGGATTTGGACTTACACGGGAATGGTTTTGGAGGAAATATACCAGATTTTCAACAGCAGGATTTTAGAGTATTTAACTTGTCAAATAACCAATTGGAGGGTCAAATACCAGAAAGCTTAAGCAACAAGTATCCAAGTTCATTTGCTGGCAACGAAGGTCTATGTGGAAAACCTTTAAGTTCCTGCAAGATTGGCGGCAACGAATCTAGATCATTGGAACCAAACCTTGATTCTCCTGACAGCAAGGGAAAAAACCACAGAACCCTTATAACTGCCATTATAGTAGTAGCAGTTATTGCTTTTTCTTCAATAGTTGCACTTCTATTTATCCACAAACACAGGAGAAAAAGGTTTAAACCCAGAACATTACCCAGGCAGGGTAATTCCCAGCCAAGTGTAGGCTTCAAGGAGTCGCACTCCGTTGATATGACAGGTGATTTGAAAGGTGGAGATAGCGAATTGAACTTTGTTAGGGAAGACAGAGGAGGATTTGATTTGCATGAGCTGCTTAGTGCCTCAGCAGCCGTTCTTGGTAGTGGAAGTTTCGGTTCCACTTACAAGGCTATGATTCTGAATGGACCAACAGTGGTTGTGAAGAGGTTTAGGCACATGAACAATGTTGGGAAACAGGAGTTTAATGAACACATGCAAAGGCTTGGAACTTTAACACACCCTAATCTTCTCCCTCTTGCAGCATTCTACCACAGAAAAGAAGATAAGTTCTTGGTTTATGACTTCGCCGAAAATGGCAGCTTGGCCAGTCATCTACACGGCAGAAATGGCTCTGTTCTTACATGGTCCACCCGTTTAAAAATCATAAAAGGGGTGGCTAGGGGCTTAGCCTACCTGTATGAAAACTTTCCAGGAAAAATGGTACCTCATGGGCATCTCAAATCTTCTAATGTGGTGCTGGATCATTCGTTTGAGCCAAAGTTGACTGAGTATGGCCTTGTGGAAGTGATGAATAAGAGCCATGCTCAGAAGTTCATGGCAGCCTACAAGGCCCCAGAGACGAGCAAATTTGGTAGGCCAAATGTGAAAAGTGATGTATGGTGTCTGGGGATCCTGATTCTGGAGGTGCTGACTGGGAAGTTCCCAGCAAACTATCTGAGACATGGGAAGGGTGGGAATAATTCTGACTTGGCAACATGGGTGGATTCAGTTGTGAGGGAAGAATGGACTGGTGAGGTGTTTGATAAGGACATCTTGGGGACTAGGAATGGGGAGAGTGAGATGCTGAAGCTGCTGAGGATTGGAATGTTTTGTTGCAAATGGAATGTAGAGAATAGGTGGGATTGGAATGAGGCAGTGGCAAAGATTCAGGAGGTGAAGGAGAATGATGGTGAGGATGATTATTCTTCTTGTTATTATGTCAGTGAAGAGGATTTGAATTCAAGGACTGTCACTGAAGATGATTTCTCTTTCTCTGTCACTAATGGATGA 1938 0.4283 MVQKRPYYCLVMLLVLGICFEPSLGDTNAQILMRFKGSLSNGKALNNWGSESSLCSWTGLLCRKNQTFYGLRLEHMELGGKIDIETLVELPTLVSFSVINNTFEGPMPEFKKLVSLRALFLSNNKFSGDIPDDAFEGMRKLKRVFLAENGFTGPIPKSLANLPRLLDLDLHGNGFGGNIPDFQQQDFRVFNLSNNQLEGQIPESLSNKYPSSFAGNEGLCGKPLSSCKIGGNESRSLEPNLDSPDSKGKNHRTLITAIIVVAVIAFSSIVALLFIHKHRRKRFKPRTLPRQGNSQPSVGFKESHSVDMTGDLKGGDSELNFVREDRGGFDLHELLSASAAVLGSGSFGSTYKAMILNGPTVVVKRFRHMNNVGKQEFNEHMQRLGTLTHPNLLPLAAFYHRKEDKFLVYDFAENGSLASHLHGRNGSVLTWSTRLKIIKGVARGLAYLYENFPGKMVPHGHLKSSNVVLDHSFEPKLTEYGLVEVMNKSHAQKFMAAYKAPETSKFGRPNVKSDVWCLGILILEVLTGKFPANYLRHGKGGNNSDLATWVDSVVREEWTGEVFDKDILGTRNGESEMLKLLRIGMFCCKWNVENRWDWNEAVAKIQEVKENDGEDDYSSCYYVSEEDLNSRTVTEDDFSFSVTNG* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1230 645 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vra6g1230 645 ProSiteProfiles Protein kinase domain profile. 336 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1230 645 Gene3D Ribonuclease Inhibitor 136 230 IPR032675 -
Vra6g1230 645 PANTHER LRR RECEPTOR-LIKE KINASE 7 617 - -
Vra6g1230 645 MobiDBLite consensus disorder prediction 288 302 - -
Vra6g1230 645 SUPERFAMILY L domain-like 48 218 - -
Vra6g1230 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 617 - -
Vra6g1230 645 Gene3D Transferase(Phosphotransferase) domain 1 412 627 - -
Vra6g1230 645 SUPERFAMILY Protein kinase-like (PK-like) 340 606 IPR011009 -
Vra6g1230 645 Gene3D Phosphorylase Kinase; domain 1 315 411 - -
Vra6g1230 645 MobiDBLite consensus disorder prediction 283 309 - -
Vra6g1230 645 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vra6g1230 645 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Vra6g1230 645 Pfam Protein kinase domain 340 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1230 645 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1230 Vra-Chr6 21919359 21926938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1230 7 627 Receptor kinase-like Gene Family AT5G35390 46.308 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g1230 Pkinase 1.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1230 - - gmx:100781593 1017.3