Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1228 ATGGAACCCCAGAAAACTCCATTAATAGATGACAGCTTATTTGATATTTTCAAAGATACAGAGTTTGGGGACACTCACTTTGGTGGAGGAGACCTCCTTTCCATCTTGGAGAACCTACAGGACTCGAAAGATTTTGCCCCCATCAACGATAATGCTGTTATTATCAACCCAACTTCCAAAGAAAACGAGCTAATGGAGTCCCGAAAGGTCTCAATATCTTCGAGTGTTCCACAGAATTTTGAAACTGAGCTTGAAATCTCACCCGAAACCAAGACAAACAAGCTTAGCCCCACCTTGCCAGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAGCAAATGAATTACAACTTGTCCGTATTGAGGTCGCTTATGCCTTCCTTCTATGCCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAATGAGTTGCAACAGTTGCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCACAAGGCCTTCACCACTAAGCCCTAGAATAAACCTACCCATTAGTCCAAGGACTCCACAGCCTGGCAGCCCTTACAAACCTAGTTACCTTTCTCCAACTATACCCAACTCTCCTACTTCTTCGGCTTCTTCTTCAATCAACGATAATATCAAAGAGCTTGTTGCCAATTCCAAGTCTGTTATCGCCGATGTTCAGGTCAAGTTTTCAGGTCCACATCTTCTTCTCAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTCAGAATAATATCAGCACTTGAAGACCTAGCACTTGAAATCCTCCATGTCAACATCAACATTGCTGATGAAACCATGCTCAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA 966 0.4306 MEPQKTPLIDDSLFDIFKDTEFGDTHFGGGDLLSILENLQDSKDFAPINDNAVIINPTSKENELMESRKVSISSSVPQNFETELEISPETKTNKLSPTLPEEPQKVSHITVERNRRKQMNYNLSVLRSLMPSFYAKRGDQASIIEGVVDYINELQQLLQCLEAKKQRKVYSDVLSPRLVSSTRPSPLSPRINLPISPRTPQPGSPYKPSYLSPTIPNSPTSSASSSINDNIKELVANSKSVIADVQVKFSGPHLLLKTVSPPIPGQALRIISALEDLALEILHVNINIADETMLNSFTIKIGIECQLSAEELAQQIQQTFY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1228 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983
Vra6g1228 321 PANTHER TRANSCRIPTION FACTOR FAMA 10 320 IPR044283 GO:0003700|GO:0010052
Vra6g1228 321 SMART finulus 109 160 IPR011598 GO:0046983
Vra6g1228 321 MobiDBLite consensus disorder prediction 178 226 - -
Vra6g1228 321 MobiDBLite consensus disorder prediction 190 209 - -
Vra6g1228 321 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 10 320 - -
Vra6g1228 321 Gene3D - 99 168 IPR036638 GO:0046983
Vra6g1228 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 171 IPR036638 GO:0046983
Vra6g1228 321 Pfam Helix-loop-helix DNA-binding domain 104 155 IPR011598 GO:0046983
Vra6g1228 321 MobiDBLite consensus disorder prediction 210 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1228 Vra-Chr6 21823091 21826148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1228 15 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 46.041 5.51e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g1228 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1228 K20558 - gmx:100809717 474.937