Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1225 ATGGCAAAGATGCTATGTGTCTTGCTCATGATTGGGGCGATGATGTTCGGAGTAATAGCTGAGCCAACGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAGCCACTCTCATCATCTGATCAACTGGGACAAGAGCTCTTCTGTGTGCAAAAGTTGGATAGGAGTGACCTGCAACTCTGAGCAATCACATGTCATTGCCCTCCAACTGACCAGAACTGGATTGAGTGGTCGAATCCCACCCAACACTCTTAGCCGTCTCTCAGCGCTCCAAACTGTGAGTCTAGCCTCAAATAGGATAACTGGTTCTTTCCCTTCTGATTTCTCTCAGCTAAATAATTTGATCTATCTGTATCTCCAATTCAACAAATTTTCTGGTCCATTGCCATCAGACTTTTCAGTATGGAAGAATCTCAGTATTGTCAATTTATCCAACAATTCTTTTAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCTCTTCTTTAGTTCTAGCCAACAACACCCTTTCGGGTGACATTCCTGATCTCACTATCCCTACCCTGCTGGAGCTGAATTTTGCCAACAATAACCTTAGCGGGGTTGTGCCCGAATCGTTGGAGAGATTTCCAAGGGACGCATTTTCTGGTGGTGGAAGTGGACAACAAGTGAAGTCTCAGAAAGGAGAAGCATCCAGGAAAAAGGAAGGTTCTGAAAGTCGAGACAAGAACAGAATTGTTTTCTTTGAGGGTTGCACTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAAGTGCTTGGAAAGGGCACGTTTGGGACAGTGTATAAGGCTGCTCTAGAAGACGTAACAACGGTGGCAGTGAAAAGGTTGAAGGATGTCGTTGTCGGAAAACGCGAGTTTGAACAACAGATGGAGATGGTCGGCAGGATAAGGCACGATAATGTGGCTGCTTTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTGTCTTCAATGTTGCATGGCAAAAGAGAAGGAAGTAGAGTTTCTTTAAACTGGGATAGCCGTTTGAAAATAGCAATTGGTGTAGCAAGAGGCATTGCTCACATCCATGCTCAACAAGGAGGAAAACTCCTCCATGGAAACATAAAGTCCTCCAACATCTTCCTCAACCCACGAGGATATGGTTGTCTATCTGACATTGGTCTTGCAACACTGATAAATCCAGCAACGAGAACAACAGGATACCGTGCCCCAGAAGCCACGGACACCCGAAAATCAGTAGCCGCATCTGATGTCTATAGTTTTGGGGTGCTGCTACTTGAGCTTCTAACTGGGAGGTTTCCTTTACATGCCAAAGGAGGTGAGGAAGTTGTCCACTTGGTTAGATGGGTGAATTCAGTGGTTAGAGAAGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTATCCAAATATTGAGGAGGAAATGGTTGAGATGCTACAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAGAGGCCAAAAATTGGTGATGTGGTGAGAATGGTGGAGGAAATTCGTAGGGTAAATGCCGAAAATAGATCATCCACTGAATCAAGGTCAGAAGGTTCCACTCCAACTCCTCATTCCATTGAGATACCTTCAACCTCTTTTGCATATTGA 1686 0.4425 MAKMLCVLLMIGAMMFGVIAEPTEDKQALLDFLHNISHSHHLINWDKSSSVCKSWIGVTCNSEQSHVIALQLTRTGLSGRIPPNTLSRLSALQTVSLASNRITGSFPSDFSQLNNLIYLYLQFNKFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLSSLVLANNTLSGDIPDLTIPTLLELNFANNNLSGVVPESLERFPRDAFSGGGSGQQVKSQKGEASRKKEGSESRDKNRIVFFEGCTLAFDLEDLLRASAEVLGKGTFGTVYKAALEDVTTVAVKRLKDVVVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSSMLHGKREGSRVSLNWDSRLKIAIGVARGIAHIHAQQGGKLLHGNIKSSNIFLNPRGYGCLSDIGLATLINPATRTTGYRAPEATDTRKSVAASDVYSFGVLLLELLTGRFPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTPDQRPKIGDVVRMVEEIRRVNAENRSSTESRSEGSTPTPHSIEIPSTSFAY* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1225 561 Gene3D Transferase(Phosphotransferase) domain 1 335 547 - -
Vra6g1225 561 ProSitePatterns Protein kinases ATP-binding region signature. 266 297 IPR017441 GO:0005524
Vra6g1225 561 SUPERFAMILY Protein kinase-like (PK-like) 264 525 IPR011009 -
Vra6g1225 561 PANTHER LRR RECEPTOR-LIKE KINASE 214 554 - -
Vra6g1225 561 PANTHER LRR RECEPTOR-LIKE KINASE 6 214 - -
Vra6g1225 561 SUPERFAMILY L domain-like 30 206 - -
Vra6g1225 561 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vra6g1225 561 Gene3D Ribonuclease Inhibitor 22 212 IPR032675 -
Vra6g1225 561 PANTHER OS05G0588300 PROTEIN 214 554 - -
Vra6g1225 561 PANTHER OS05G0588300 PROTEIN 6 214 - -
Vra6g1225 561 Pfam Protein kinase domain 263 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1225 561 Gene3D Phosphorylase Kinase; domain 1 224 334 - -
Vra6g1225 561 MobiDBLite consensus disorder prediction 211 235 - -
Vra6g1225 561 MobiDBLite consensus disorder prediction 531 561 - -
Vra6g1225 561 MobiDBLite consensus disorder prediction 537 561 - -
Vra6g1225 561 ProSiteProfiles Protein kinase domain profile. 260 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1225 561 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1225 Vra-Chr6 21682508 21685364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1225 4 549 Receptor kinase-like Gene Family AT5G53320 51.993 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g1225 Pkinase 8.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1225 - - gmx:100810095 849.736