Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1224 ATGGAATCACCCAACTCATCCCCCATTTTCCCACAATTCACCCTAGACACCACCACCACCAAAAACAATAACCCTGATCACTTCATTGTCGAGGACCTTTTGGATTTCTCCAACGACGATGCTGTAAACGCCGACACCATATTCGATTCTCTCCCTGTCAACTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCCTTTTCCGGCTACGACCCCAATACCTTTCCGGACATTGGTAGCCGGAATCTCTCCGATGGTCATTTTTCCGGTGACCTATGCGTACCGTACGATGATATAGCAGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCCAGCGAGGACCTACAGAAGATGCAGCTGATATCAGGCATGAATGCGAGAAACGACCACGTACCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAACGGGTTTCATTCCGAGCCCACCCGAAACAACCCGATATTCAATTCGGAAGTGTCGGTCCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCCCCATGCAACTGGGCATCGCGCCTCCTTGTCCTGTCCCCGACGACGTCGTCTTCAGACACTGAGGTCGTTGCTCCTGTTTCCACTCATTCCGGCACAAAAAAGCCCGCGAAGACAACACCAAGAAAGAAAGACAGCGGCGACGGCAGTGGTGGAGACGGACGCAGGTGTCTGCATTGCGCCACGGACAAGACACCACAGTGGCGAACCGGGCCCATGGGCCCAAAGACGCTGTGTAACGCGTGTGGAGTGAGGTACAAGTCGGGGCGGCTCGTGCCCGAGTACAGACCCGCGGCAAGCCCAACGTTTGTTCTGACAAAACACTCTAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTACGGGCCCAACAGCACCAGCAACAACAGTTCCTACAACACCATCATCATCAGAACATGCTGTTAGACGTATCCAACAGTGAAGATTACTTGGTCCACCAACACATGGGACCCGATTACAGGCAGCTTATCTAG 1053 0.5442 MESPNSSPIFPQFTLDTTTTKNNNPDHFIVEDLLDFSNDDAVNADTIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPNTFPDIGSRNLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVPKARGFHSEPTRNGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSDTEVVAPVSTHSGTKKPAKTTPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHQNMLLDVSNSEDYLVHQHMGPDYRQLI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1224 350 MobiDBLite consensus disorder prediction 198 237 - -
Vra6g1224 350 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Vra6g1224 350 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Vra6g1224 350 MobiDBLite consensus disorder prediction 198 217 - -
Vra6g1224 350 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Vra6g1224 350 MobiDBLite consensus disorder prediction 152 168 - -
Vra6g1224 350 PIRSF Txn_fac_GATA_plant 12 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra6g1224 350 PANTHER GATA TRANSCRIPTION FACTOR 14 350 - -
Vra6g1224 350 MobiDBLite consensus disorder prediction 220 237 - -
Vra6g1224 350 Gene3D - 235 323 IPR013088 GO:0006355|GO:0008270
Vra6g1224 350 PANTHER GATA TRANSCRIPTION FACTOR 14 350 - -
Vra6g1224 350 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Vra6g1224 350 MobiDBLite consensus disorder prediction 145 183 - -
Vra6g1224 350 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Vra6g1224 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1224 Vra-Chr6 21654776 21656946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1224 24 350 C2C2-Gata Transcription Factor Family AT4G32890 49.558 7.36e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra6g1224 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1224 - - gmx:100784144 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1224 6 21654776 21656946 Vra6g1224 6 21654776 21656946 ECH