Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1223 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATGCTAGTAAGCAATTACGGCCTGGGTGGTCCTCTACAGATGTTGCTGGTAGCAATAGTTCAAAGTGGTCGTATTTGGAAGGAAGTGATCAATTAAAGCCTGATATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCCGAGGTTCACATAAGGACGATGTTATGAATAAAGACTATGGATGTTTGGATGCAACAATGGAATGGGATGAGGATGGTTACAACAAGAAAATTTCTCCTGAATCTGAGGAATGGAAACCTAAGAGACATAGTCAATCTCCTAAAAATGGTTGGAGCAGGCCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAGTGACAGAAATAGAATGCGGGCTGGAGGATCGGCACAACCATGTAGAGACTTTGGTGCTGGTAAATGCAGAAGAGGTAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGCAGGAAAGATGGAGCTCCTAGATATTCTGTTCCCCAAGACGGTAGAGACTATTCTCTCAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATGACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAAATAGAGAGAGGGATATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGACATGGACCAAACCGAAGTAATGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATCCTGGGGGAGATCATCATAGGATGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCCAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATGAAGTTTTGGACAGTCCAAAGTGGAATGATACAGTTGCTGTATCTGATTCAGGAAAGCTGGTTGAGGGCAAAAGTGAAAATGTTGGTGCCACAGAGCCAGGATTCACTTCGTTACCTACAAGGTATGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATGATGAGCAGCCTTTTTCAAGTGATAAGAAGGAAGTTAACAGTTGGGTATCAGGAAGTACTGGTACTAACATTGTTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATACGAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCATCTAACACCATTGAAGAAAAGCATGAACAAAATAAGCGTGGGGTAAAACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAATACAAATTGCTGCAGCACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCTGGCTTGCAAGCAGTTGGACAAAGGCAGGCCCCAGTTCCGATTCTACCTTCAAAGAGAGGAATTGTTGATGGTATGCCAAACCAGGAAGTCTCCACTGAGAAAAAATACACTGCTGAACCAAATATTATGGATTCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAACTACCGCAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGTTGTGCCTGTTTCCAATTCATTCATCCGCTCTGATCCTGCTGTGCCTGTTTCCAATACGTTCATCCACCCTGATCCTGCTGTTGGACTCCTGAAGCAGTATGATCCAATGTGTGATAGTGTTGAGCCAAAGAGGGCTGCTGCAAGTGGGTTACCCCCATCCATTCCTCCAAGTAAAAGAGTTGCAGAAGATGTTATGGAAATTCCATCACAGTTGTCCAACACATCAAAACAAAACCATGGTGATTCTTCCAAGGCTGCTGGCCCAGAAGAATTAGTCAAGAGTGATCCTCTAGTCCAGTTGCAATCAGGTCAAAACACCGAAGTTGGTAAGGATGATAACAAGGAAGTGTTACCCGAGGAAAGACACAAATCTCGAGATGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGAGTCCAAGAAAACAAAGGATTTGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAATAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2583 0.4301 MSGSGKKRSSKWDLRVDPEFSPDASKQLRPGWSSTDVAGSNSSKWSYLEGSDQLKPDMGFSSKEPFSGGRGSHKDDVMNKDYGCLDATMEWDEDGYNKKISPESEEWKPKRHSQSPKNGWSRPVRSRSRSPPHGFRWDSGVSDRNRMRAGGSAQPCRDFGAGKCRRGSHCHFLHDSQNHEDSWENKSRKDGAPRYSVPQDGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHDNSDGHGKVSVDELNRERDIDRRHRDSSFEQGGGHGPNRSNDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWASNPGGDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKADADEVLDSPKWNDTVAVSDSGKLVEGKSENVGATEPGFTSLPTRYGWSHSLDKSRVHDEQPFSSDKKEVNSWVSGSTGTNIVSQSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKHEQNKRGVKQGGTYLATSERDRIQIAAAQGTNQNAESLNPLHSSGLQAVGQRQAPVPILPSKRGIVDGMPNQEVSTEKKYTAEPNIMDSGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHYAKDTSSLAKAEVSVVPVSNSFIRSDPAVPVSNTFIHPDPAVGLLKQYDPMCDSVEPKRAAASGLPPSIPPSKRVAEDVMEIPSQLSNTSKQNHGDSSKAAGPEELVKSDPLVQLQSGQNTEVGKDDNKEVLPEERHKSRDDPKSTKENGPLENMEQTGGPDESKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1223 860 MobiDBLite consensus disorder prediction 240 263 - -
Vra6g1223 860 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 858 - -
Vra6g1223 860 SMART c3hfinal6 150 176 IPR000571 GO:0046872
Vra6g1223 860 SMART c3hfinal6 210 235 IPR000571 GO:0046872
Vra6g1223 860 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Vra6g1223 860 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Vra6g1223 860 MobiDBLite consensus disorder prediction 8 22 - -
Vra6g1223 860 Pfam RNA-binding, Nab2-type zinc finger 155 174 - -
Vra6g1223 860 SUPERFAMILY CCCH zinc finger 274 297 IPR036855 GO:0046872
Vra6g1223 860 MobiDBLite consensus disorder prediction 240 274 - -
Vra6g1223 860 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 858 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 176 208 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 27 49 - -
Vra6g1223 860 ProSiteProfiles Zinc finger C3H1-type profile. 272 299 IPR000571 GO:0046872
Vra6g1223 860 MobiDBLite consensus disorder prediction 93 159 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 1 79 - -
Vra6g1223 860 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 234 IPR000571 GO:0046872
Vra6g1223 860 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Vra6g1223 860 MobiDBLite consensus disorder prediction 303 359 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 303 395 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 93 113 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 718 774 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 729 755 - -
Vra6g1223 860 MobiDBLite consensus disorder prediction 176 196 - -
Vra6g1223 860 Pfam CCCH-type zinc finger 277 297 IPR041367 -
Vra6g1223 860 Gene3D - 148 251 - -
Vra6g1223 860 Gene3D - 267 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1223 Vra-Chr6 21623229 21632000 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra6g1223 zf-CCCH 0.00028 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1223 - K22909 gmx:100783856 1340.87