Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1220 ATGAAGGTTATCGTCGCCTATTTGCTCGTCGTATTGGGAAGTAATGTTGCTCCCTTCGCCGATGACTTGAGGCTCATCCTTGGATCCGTTGGAGCAGACGCAAATAACGACAATATTAGTAACCTCCTGTTCGAAGTCAAGGGCAAAGACATTGCTGAACTTATCGCCGCTGGTAGGGAAAGGTTGGCCTTAGTGCCTTCCGGCGGTGGCACTGCCGTTGCAGTGACCGCAGCTCCTGGAGGTGGCACTTCTACTCCGGCAGCAGCTGAATCGAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGACAATATGGGCTTCAGTCTTTTTGATTAA 342 0.5029 MKVIVAYLLVVLGSNVAPFADDLRLILGSVGADANNDNISNLLFEVKGKDIAELIAAGRERLALVPSGGGTAVAVTAAPGGGTSTPAAAESKKEEKVEEKEESDDNMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1220 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vra6g1220 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vra6g1220 113 Gene3D - 1 59 IPR038716 -
Vra6g1220 113 MobiDBLite consensus disorder prediction 89 107 - -
Vra6g1220 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
Vra6g1220 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vra6g1220 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vra6g1220 113 MobiDBLite consensus disorder prediction 75 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1220 Vra-Chr6 21403600 21404044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1220 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 62.832 1.82e-26 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1220 K02943 - gmx:100787024 143.665