Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1210 ATGGAGAGCACCGACTCTTCCACCGGTTCACAACACCAGCCGCAATTGCCACCTGGCTTCCGCTTCCACCCCACCGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCGGTTCCTCTTCCCGTCGCCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCGAGGGACAGGAAGTATCCGAACGGTGCGAGGCCAAACAGGGCGGCCACTTCTGGGTATTGGAAGGCCACTGGAACCGATAAGCCCGTGTTAACCTCTGGGGGAACCCAGAAGGTTGGAGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGAATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAATACGCACAGGTCTCCGATGGAGCATGACAGGGAAGATTCAATGGAAGACATGATTGGAGGGATTCCTCCTTCGATCAACGTGGGTCACATGAGTGGGAGGTATCATCACCATCATCATCATCTTTCAAAGATGTCAACAGGCTACAGCAGTGCATTGCTGGAAAATGACCAGAACCTGTTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAACACAAGTACGACTGGTACTACAGCTGGTGGCATGGGGGCCTCAAACTCCAAGGCAGAGCTTCCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTGTAAAAGAACACTGTCGTCGCTGTATTGGAATGATGAGGATTTGGCTGGCACCTCATCATCCAACAAGAGGTTGAATTTGGAAAGTGGGGACAACAATCACGGAAGTGTTGTGAGAACTGATCAAGATAATGGCACTGCCACCTCAATTGTCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAGCAATCTATGTTGGGATCCATAGGCGATGGACTTCTTAGGACAACATATCAAATACCAGGAATGAATTGGAACTTGGAAGCAGTTGTTAGAGTCTGA 1140 0.493 MESTDSSTGSQHQPQLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMSGRYHHHHHHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTGTTAGGMGASNSKAELPFVPTMTHSSNTCKRTLSSLYWNDEDLAGTSSSNKRLNLESGDNNHGSVVRTDQDNGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWNLEAVVRV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1210 379 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 349 - -
Vra6g1210 379 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Vra6g1210 379 MobiDBLite consensus disorder prediction 1 15 - -
Vra6g1210 379 MobiDBLite consensus disorder prediction 302 325 - -
Vra6g1210 379 PANTHER NAC TRANSCRIPTION FACTOR 56 1 349 - -
Vra6g1210 379 MobiDBLite consensus disorder prediction 1 21 - -
Vra6g1210 379 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Vra6g1210 379 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Vra6g1210 379 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1210 Vra-Chr6 21125549 21127755 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1210 1 371 NAC Transcription Factor Family AT3G15510 54.308 2.31e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g1210 NAM 2.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1210 - - vra:106763825 757.288