Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1208 ATGGGAGTTCCAGAGAAAGACCCTCTTGCCCAGTTGAGTCTACCCCCTGGTTTTCGGTTCTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTCTGCCGCAAGGTCGCCGGCCACCATTTCTCTCTCCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTCCCAAGCAAGGCGATTTTCGGGGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGGTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAGGGTAGAAAAGTTGGCATAAAAAAAGCTCTGGTCTTTTACGTTGGCAAAGCTCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTTCCCGAAAGACCACCGGAACCAAGTTGGACGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGGCGGCGCAGAACGGCGTCGTTTCGAGCAGGGAATACACTCAATACAGCAACGGTTCGTCGTCGTCGTCTTCGTCCCATCTGGACGACGTTCTGGAATCGCTGCCGACGATCGACGAACGATGTTTTGCGATGCCACGTGTCAGTACGATGCAGGCACAGCAGGAGGAGAAGGTGAGCATTCATCAGAACCTGGGTGCGGGTGGGTTGGTGGATTGGGCCAATCCTGCGGTTCTGAATTCGGTGGGTGAATTCGTTTCGGGGAATAATCAAGTGGTGCAGGAGCAGACACAGGGGATGGTGAACTACGGCGGGTGCAATGACCTTTATGTCCCCACGTTCTGCCACGTGGAGTCTACACTTCCGCAAAAGATGGAGGAAGAGGTGCAAAGCGGTGTGAGAAGCCAAAACAACAATAACCCGTGGTTTGTTCAGAACGAATTTACGCAGGGGTATCAGAACCCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGGCGGTGGGATTCGGGTTCAGGCAATGA 1026 0.5292 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAAQNGVVSSREYTQYSNGSSSSSSSHLDDVLESLPTIDERCFAMPRVSTMQAQQEEKVSIHQNLGAGGLVDWANPAVLNSVGEFVSGNNQVVQEQTQGMVNYGGCNDLYVPTFCHVESTLPQKMEEEVQSGVRSQNNNNPWFVQNEFTQGYQNPVDTCGFKFPVQAVGFGFRQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1208 341 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vra6g1208 341 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Vra6g1208 341 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Vra6g1208 341 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vra6g1208 341 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 318 - -
Vra6g1208 341 PANTHER NAC TRANSCRIPTION FACTOR 56 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1208 Vra-Chr6 21019887 21021642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1208 1 276 NAC Transcription Factor Family AT3G15500 63.230 1.42e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g1208 NAM 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1208 - - gmx:100170718 613.609