Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1207 ATGGATCATCAAGAGATAGCAGACATAGAGTCTCAAAATGTGGATACCCCCCCTCACGTATCACACAAAGTAAAACGTCAAGTAACTCTTAAGTTTGATGACGTTGTGTACAAAATTAAGACAAGAAAAGGTGGATTATTTAAGAAGAATCGAGGAACAGTTGAAAAAGAGATACTGAAGGGAGTGACAGGTGTTGTTGAACCTGGTGAAATGCTGGCCATGTTAGGTCCTTCTGGGAGTGGCAAAACAACACTGCTGACAGCATTGGGAGGTAGGCTTGGAGGGAAGCTTCATGGAAGCATAACATACAATGGTGAAGCTTTCTCAAATGCCATGAAGAGGAACACTGGCTTTGTTACCCAAGATGATGTTCTCTACCCCCACTTGACTGTGCTTGAGACCCTGATCTTTACTGCACTTCTCAGATTGCCCAACAGTATCACAAAGGAAAAGAAAGTTGAGCAGGCAAAAGGGGTGATAGATCAACTCGGTTTAACCAGGTGCAAGGATAGCATAGTTGGAAGCCCTTACTTGAGGGGGGTTTCTGGGGGAGAGAGAAAGAGGGTTAGCATAGGACAAGAACTACTCATAAATCCAAGCTTGTTGTTTCTTGATGAACCTACTTCTGGCCTAGACTCAACCACAGCACAAAGAATTGTCTCAACCTTGTGGGAACTAGCATGTGGGGGGAGAACTGTTGTGATGACAATTCACCAACCTTCAAGTAGGCTATACTACATGTTTCATAAGGTGTTACTGCTATCTGAAGGGAACACATTGTACTTTGGAAAGGGATCTGAAGCCATAGAGTATTTTTCTAGTATGGGATATGCCCCATCTTTGGCCATGAACCCCTCAGATTTCCTTTTGGATCTTGCAAACGGTATCTACACTGATGAATTTAATGAGGATCATATTATAGATAAACAGAAATTGATTTCGGTACATAAGGAAAACTGTGCTGCACAATCGAAGCCGGCACTTAAAGGAATCAATGACTCTGGCAAAGACCAGAATAGATTTCAAGAAGAGAGCTCTGAAAAATGGCCTACGAACTGGGGGCAGCAATTCCTTGTACTATTAAGAAGAGACATCAAAGAGAGAAGGCATGAATCATTCTCTCTTTTGCGTGTTTGTCAGGTCCTTGTGGTTGCTCTAATTTCAGGACTACTCTGGTTTAAGTCTGATATCTCACATTTGCAGGATCAGATTGGGCTTCTGTTCTTCATATCTGGCTTTTGGGGTTTCTTCCCTCTCTTTCAAGCAATTTTCACCTTTCCTCAAGAGCTAATGATGCTACAGAAAGAAAGATCTTCAGGAATGTACAGGCTTTCCTCATATTTCATGTCAAGGGTGGTAGCTGACCTTCCCATGGAACTTGTTCTTCCCACCATATTCCTTATGATAACCTATTGGATGACAGGGTTGAAGGCCAATGTGGTGAACTTCGTGTGCACATTGCTCTCTCTCTTACTCAATGTGTTAGTAGCACAAGGTCTAGGCCTTGCCCTTGGTGCTTCTGTGATGGATCAAAAAGCTGCAACAACACTTGCCTCAGTGATCATGCTATGCTTTTTGCTGGCTGGGGGATTTTATGTTCAGCATGTTCCAAAGTTTATAGCATGGATCAAGTACATTTCTATCAGCTACTACACCTACCAGCTGTTCATTGGCTCTCAATATAGATATGGTGAGACATACCCTTGTTCCACTGGACAGTGTCGAATTGTGGAGTTTCCTTCCATAAAGCAAATGGGGGTTCATTTTGGATTGCATGACCAACTCATGGCTGCTTTAGGTCTGTTGATAATGCTCATAGTTTACAGAATTATAGCCTATGTTGCCCTTATGAGAATTGGAGTTACCAAGAATTAG 1875 0.4245 MDHQEIADIESQNVDTPPHVSHKVKRQVTLKFDDVVYKIKTRKGGLFKKNRGTVEKEILKGVTGVVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLHGSITYNGEAFSNAMKRNTGFVTQDDVLYPHLTVLETLIFTALLRLPNSITKEKKVEQAKGVIDQLGLTRCKDSIVGSPYLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWELACGGRTVVMTIHQPSSRLYYMFHKVLLLSEGNTLYFGKGSEAIEYFSSMGYAPSLAMNPSDFLLDLANGIYTDEFNEDHIIDKQKLISVHKENCAAQSKPALKGINDSGKDQNRFQEESSEKWPTNWGQQFLVLLRRDIKERRHESFSLLRVCQVLVVALISGLLWFKSDISHLQDQIGLLFFISGFWGFFPLFQAIFTFPQELMMLQKERSSGMYRLSSYFMSRVVADLPMELVLPTIFLMITYWMTGLKANVVNFVCTLLSLLLNVLVAQGLGLALGASVMDQKAATTLASVIMLCFLLAGGFYVQHVPKFIAWIKYISISYYTYQLFIGSQYRYGETYPCSTGQCRIVEFPSIKQMGVHFGLHDQLMAALGLLIMLIVYRIIAYVALMRIGVTKN* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1207 624 Pfam ABC-2 type transporter 238 305 IPR043926 GO:0140359
Vra6g1207 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 276 IPR027417 -
Vra6g1207 624 CDD ABCG_EPDR 28 263 - -
Vra6g1207 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 620 - -
Vra6g1207 624 SMART AAA_5 68 258 IPR003593 -
Vra6g1207 624 Pfam ABC-2 type transporter 355 561 IPR013525 GO:0016020|GO:0140359
Vra6g1207 624 Pfam ABC transporter 59 209 IPR003439 GO:0005524
Vra6g1207 624 Gene3D - 46 275 IPR027417 -
Vra6g1207 624 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g1207 624 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Vra6g1207 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 281 IPR003439 GO:0005524
Vra6g1207 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 20 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1207 Vra-Chr6 20996330 20999626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1207 8 242 Calmodulin-binding Proteins AT2G36910 25.726 6.57e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1207 K05681 - gmx:100816135 1006.51