Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1201 ATGAGCAAAGCCTTGGGAGAAGAAGAAGACGAAGAAGAACAAGAACAAGAACGAGAGCGAGACGAAGACCAAGACCAAGACTGTTTCTACGACTCAAACGACCGTTTACTCTCTCTCTCCTCCTCCTGCTCATGCTCCAATTCCAACTCCGACAACGATGAAACCGAGAACGAACCCCAACCCCATCATCCAAACGACACACTCCCCAATTTCCCCCTAACCAACAACTACGACATATGGATCTCCCAACCCACCTCTGTCTCCGAGCGCCGCACGCGCCTCCTACTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTCCCCCACGCGATCGCGTTTCCCCAATCCGATCCAAATCCGACGTCACCACCACAAACACCACCTCCGCCGCCGCCGCCAATCCTAGGCCTCCGAACCCCAAGCCTCCTTCCGAAGAGCTCTGCACGATACGCGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACTGGGAGGCACTTGACCATGGAGGAGTTCGAGATGTCTGTGGGGCACTCCCCCATCGTTCAGGAGTTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTCGATTCCAATTCGAGTGGCTCCAAGGTGAAGAAGAAAGGAGGGGGTTGGTTGAAGAGTATCAAGAGTGTCGCGAGCTCCGTTGCCGGGTACAGGGATCGACGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACTGACGACAGCCAGGACGCGGCGTTTCACGGTCCGGAGAGGGTGAGAGTGAAGCAGTATGGGAAGAGTTGCAAAGAAGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCTCATAATGGGTCTATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTAGCGAGTGCTGGTGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTCGATAGGGAGAAGGGGGAAGATGGGGGGAGTGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCGACGGCTGCGGCAATGCTGTCTCCGCTCAGGGATGTGGAGAGGAAGAGGAAAGGGAGATCCAGCGTGAGTAGGAAGTCCTTGAGCCTGGACCAGTTTGTCGTGCCGCAGACCGTGTTTGCACTCACTGACAAACCAGTTTGCTCCCTTCAGGGACATCTGCATGATGTTCTTGACCTCTCATGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTGCCTACCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGCCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCACTTATATAATACATCTGAAAATAAGTTGCAACAGAAGAGTCAGATCAATCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTGTTGATCTGGTCCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATGTTGTCGCTGCAAGTGAGGACTCTCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCGAACAGAAGCAAGGGTGTCACTGTAACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAATGCTGATGAAGTCGCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCAAGATCTGCATCTGGTTACAGCAACAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTGAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2367 0.5011 MSKALGEEEDEEEQEQERERDEDQDQDCFYDSNDRLLSLSSSCSCSNSNSDNDETENEPQPHHPNDTLPNFPLTNNYDIWISQPTSVSERRTRLLLSLGLSSLTRQNPHPPPRDRVSPIRSKSDVTTTNTTSAAAANPRPPNPKPPSEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMSVGHSPIVQELMRRQNVEEASVDSNSSGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGSVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSLQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLPTKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNADEVASANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1201 788 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Vra6g1201 788 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Vra6g1201 788 PRINTS G protein beta WD-40 repeat signature 474 488 IPR020472 -
Vra6g1201 788 MobiDBLite consensus disorder prediction 31 54 - -
Vra6g1201 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 446 - -
Vra6g1201 788 SUPERFAMILY WD40 repeat-like 292 623 IPR036322 GO:0005515
Vra6g1201 788 MobiDBLite consensus disorder prediction 102 149 - -
Vra6g1201 788 MobiDBLite consensus disorder prediction 668 692 - -
Vra6g1201 788 Gene3D - 375 645 IPR015943 GO:0005515
Vra6g1201 788 Coils Coil 2 26 - -
Vra6g1201 788 MobiDBLite consensus disorder prediction 1 70 - -
Vra6g1201 788 MobiDBLite consensus disorder prediction 7 28 - -
Vra6g1201 788 Gene3D - 240 365 IPR015943 GO:0005515
Vra6g1201 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 488 IPR001680 GO:0005515
Vra6g1201 788 PANTHER WD REPEAT DOMAIN 44 18 102 IPR040324 -
Vra6g1201 788 PANTHER WD REPEAT DOMAIN 44 149 788 IPR040324 -
Vra6g1201 788 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 18 102 - -
Vra6g1201 788 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 149 788 - -
Vra6g1201 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 338 IPR001680 GO:0005515
Vra6g1201 788 MobiDBLite consensus disorder prediction 239 260 - -
Vra6g1201 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 330 - -
Vra6g1201 788 Pfam WD domain, G-beta repeat 585 622 IPR001680 GO:0005515
Vra6g1201 788 Pfam WD domain, G-beta repeat 450 487 IPR001680 GO:0005515
Vra6g1201 788 Pfam WD domain, G-beta repeat 409 444 IPR001680 GO:0005515
Vra6g1201 788 Pfam WD domain, G-beta repeat 296 328 IPR001680 GO:0005515
Vra6g1201 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 454 488 - -
Vra6g1201 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 454 IPR001680 GO:0005515
Vra6g1201 788 SMART WD40_4 535 580 IPR001680 GO:0005515
Vra6g1201 788 SMART WD40_4 290 329 IPR001680 GO:0005515
Vra6g1201 788 SMART WD40_4 490 528 IPR001680 GO:0005515
Vra6g1201 788 SMART WD40_4 581 622 IPR001680 GO:0005515
Vra6g1201 788 SMART WD40_4 407 445 IPR001680 GO:0005515
Vra6g1201 788 SMART WD40_4 448 487 IPR001680 GO:0005515
Vra6g1201 788 MobiDBLite consensus disorder prediction 121 137 - -
Vra6g1201 788 MobiDBLite consensus disorder prediction 236 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1201 Vra-Chr6 20791136 20797057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1201 406 619 U-box Gene Family AT2G33340 26.609 1.12e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1201 K20241 - gmx:100815065 1238.79