Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1188 ATGGGGAGAAAAGGAAGCAGCTGGTTCTCGTCCGTGAAGAAAGTTTTCAAGTCATCTTCTAAAGACTTGTCAGGGCCTGAGAAGAAGAAAGATAGCACACAGAAATTATTACAGAATGAAGTGGCAGAGGTGGTTTCTTTTGAGCATTTCCCAGTAGAGAGTTCTACAGATAATAATGTGACAAATGAAGAGAGTGGCACTTCAACTCCATTTACAGAAGATAAAAGCCACGCCATTGCCGTTGCAGCAGCAACTGCCGCCGCTGCTGAAGCTGCCGTGGCGGCTGCTCAAGCAGCTGCAAGAGTGGTGAGATTGGTCGGTTATGGACGCCACTCCAAGGAAGAAAGAGCAGCAATACTCATTCAATCATACTACAGAGGCTATCTAGCTCGACGAGCACTGCGAGCACTGAAGGGATTGGTGAGGCTGCAAGCACTGGTGAGGGGACACAACGTGAGAAAGCAAGCCCAAATGACGATGCGATGCATGCAAGCACTGGTGAGGGTGCAGGCCCGAGTAAGGGCTCGCCGACTCCAATTGAGTCACGTCGACGACGAAAGACAACACTATGAGAAGATGGAAGAGCCCAAGCCCACACCCAAACCCATGCCCATGAGCCCCATGAGAAGGACACCCATCAATAATGATTGGGACAATAGGCGTCAAAGTAGCTACAAAATTAAGGAAAACGATTTGAGGAAACATGAGGCTGCAATGAAGAGGGAGAGAGCTCTCGCATACGCTTTCAACTTTCAACAGCAAGAGCAGCAAAAACAATATTTACTGGCTGAATCGAAGGGTAAGGATGATATAGAAATAAAGGAAAAAGGGCAATGGGGTTGGAACTGGTTGGAGCGTTGGATGTCATCGCAACCATACAATGTGAGGAACATGGGACCACGTGAGACCTCTTACATTACTCCTGCTTCTACAACGTCAACCACCACAGATAACATGTCTGAGAAGACCGTGGAAATGGATATGATTGCAACTCCAGGCCCAACTAATATCAGAAGCCTCAGTCCCATAAACCCAGACTTTATTGATTCAAGCCCACTCTCCAGTAGGCACAATCATCACATACCTCCCAGCCCAAATAGACGCTATATGGCCCCAACTCAGTCTGCAAAAGCCAAGGTTCGGGTTCAAGGCCCATCTAAACCTCGGGTTTCAACTGGGCCTCAGTGGAACTCCTCAACTAAGGGAGGATCCACCTGCGACTCGTCCAGTTCAGGTGGAGGAATCACCGCTTACCAAATTCCAAGAAGTCCAGGCCCAAAAATTAATGGCATTCGTTCACAGTCCAGAAGGACTGTTGGTAGCAGTCCAGATTATATTGAGGATTGGGCCCTTCCTCTTGGAGCCCATGGTTGGACTTAA 1380 0.4833 MGRKGSSWFSSVKKVFKSSSKDLSGPEKKKDSTQKLLQNEVAEVVSFEHFPVESSTDNNVTNEESGTSTPFTEDKSHAIAVAAATAAAAEAAVAAAQAAARVVRLVGYGRHSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHVDDERQHYEKMEEPKPTPKPMPMSPMRRTPINNDWDNRRQSSYKIKENDLRKHEAAMKRERALAYAFNFQQQEQQKQYLLAESKGKDDIEIKEKGQWGWNWLERWMSSQPYNVRNMGPRETSYITPASTTSTTTDNMSEKTVEMDMIATPGPTNIRSLSPINPDFIDSSPLSSRHNHHIPPSPNRRYMAPTQSAKAKVRVQGPSKPRVSTGPQWNSSTKGGSTCDSSSSGGGITAYQIPRSPGPKINGIRSQSRRTVGSSPDYIEDWALPLGAHGWT* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1188 459 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vra6g1188 459 SMART iq_5 136 157 IPR000048 GO:0005515
Vra6g1188 459 SMART iq_5 113 135 IPR000048 GO:0005515
Vra6g1188 459 Pfam Protein of unknown function (DUF4005) 352 397 IPR025064 -
Vra6g1188 459 Gene3D - 111 165 - -
Vra6g1188 459 PANTHER IQ-DOMAIN 5-RELATED 1 441 - -
Vra6g1188 459 MobiDBLite consensus disorder prediction 16 35 - -
Vra6g1188 459 MobiDBLite consensus disorder prediction 20 35 - -
Vra6g1188 459 PANTHER IQ-DOMAIN 21 1 441 - -
Vra6g1188 459 MobiDBLite consensus disorder prediction 350 444 - -
Vra6g1188 459 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Vra6g1188 459 MobiDBLite consensus disorder prediction 53 73 - -
Vra6g1188 459 Coils Coil 225 245 - -
Vra6g1188 459 MobiDBLite consensus disorder prediction 186 218 - -
Vra6g1188 459 MobiDBLite consensus disorder prediction 388 417 - -
Vra6g1188 459 Pfam IQ calmodulin-binding motif 141 156 IPR000048 GO:0005515
Vra6g1188 459 Pfam IQ calmodulin-binding motif 115 135 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1188 Vra-Chr6 20257773 20263070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1188 1 427 IQD Protein Family AT3G49260 49.453 2.10e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1188 - - gmx:100798026 572.778