Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1186 ATGAAGAAGCCAAAACACCACTCGCCGTCGGCCAACGCTCACCGGCGAGTGGACCCTGATTCCGGTCAGTTTGTCGCCAAGATAAAGAACGGTCGCCAGAGACGGCTCAAAATCAAGCAAATGAAGTACACTTGCCAGGCGAAGATCCGCATCAGGAATGGAACCGTCGGCGTCTCGCCCCCGCCGGCGGAGGACCTGGAGGGAGGGAGCAGAGAGATTCATGAGCACGTCGAGATATCTTTGTCGCTGGCGGCGGCGTCGTCGTCCTCGGAGGAGGAGGAGCGGTCGTCGTCGGAGAAAAACGACGGTGTTTTGTCGTACGGGTCAACGTCTTTGATTGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGCGGAGATAGGGTTTGCTGCGAAGGAGAGAGGGAAGTACGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGGGCAGGTGGCGGAGGCGTGTCGCGAGCGGTTGCACCGGCTGGTTGCGGAGGAAGTGGAGAGGAGTGAGAGTCACGTGCAATGGGACTGGCAGGGAGTGATGGAAGGGTGTTTCCGTAAAATGGACATCGAGGTCGCCGGTAATGCGGCCATCAGGACTGTGGGTTCCACGGCGGTTGTAGCTGTGATCGCGGCGGAGGAGCTTGTCATCGCTAATTGCGGTGATTGTAGGGCTGTGTTGGGAAGAGGAGGTGAGGCCGTCGACTTGTCTAGTGATCATAAGCCCGATAGACCAGACGAGTTGATGCGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCTACTTCAAGATCCATAGGAGATCAGTACCTTCGACCTTATGTGATATCAAAACCAGAAGTGACAGTGACGAAGCGAAGCAGCAAGGATGAATTTGTGATACTAGCAAGTGATGGATTGTGGGATGTTATGTCGAGTGAGGTTGCGTGCCAAGTTGTAAGGAAATGCCTGAATGGACAGATTAGGAGAGTGTGCAATGGAGTTGGGAACCATGAAAACCGTGCTGCCGAGGCTGCAAGCCTCTTAGCTGAGATAGCATTGGCAAAGGGAAGTAAAGATAACACCAGTGTCATTGTAGTTGAGCTAAGAGGAACAGTAACATAA 1137 0.5462 MKKPKHHSPSANAHRRVDPDSGQFVAKIKNGRQRRLKIKQMKYTCQAKIRIRNGTVGVSPPPAEDLEGGSREIHEHVEISLSLAAASSSSEEEERSSSEKNDGVLSYGSTSLIGSRKEMEDAVSAEIGFAAKERGKYDFFAVYDGHGGGQVAEACRERLHRLVAEEVERSESHVQWDWQGVMEGCFRKMDIEVAGNAAIRTVGSTAVVAVIAAEELVIANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRSSKDEFVILASDGLWDVMSSEVACQVVRKCLNGQIRRVCNGVGNHENRAAEAASLLAEIALAKGSKDNTSVIVVELRGTVT* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1186 378 Pfam Protein phosphatase 2C 107 366 IPR001932 -
Vra6g1186 378 PANTHER ALPHABET, ISOFORM E-RELATED 80 377 - -
Vra6g1186 378 SMART PP2C_4 95 371 IPR001932 -
Vra6g1186 378 MobiDBLite consensus disorder prediction 1 31 - -
Vra6g1186 378 SUPERFAMILY PP2C-like 103 374 IPR036457 -
Vra6g1186 378 PANTHER PROTEIN PHOSPHATASE 2C 51-RELATED 80 377 - -
Vra6g1186 378 MobiDBLite consensus disorder prediction 83 104 - -
Vra6g1186 378 CDD PP2Cc 106 373 IPR001932 -
Vra6g1186 378 Gene3D - 97 376 IPR036457 -
Vra6g1186 378 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Vra6g1186 378 ProSiteProfiles PPM-type phosphatase domain profile. 106 373 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1186 Vra-Chr6 20224754 20227473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1186 98 374 PP2C-type Phosphatase Gene Family AT2G29380 50.842 5.74e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1186 K14497 - gmx:100807235 584.719