Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1185 ATATGGGACACTTCCGGGAGGCTTGATTGCTCGCTCAACTGCCACAGGTTCCTGTCAATTTTGAGTATATGTGATGGCAGGCCAATATGGTACCAGCTTTTATTATATGCAAGAGATACTATTTACACTGCCTGGATAGGTCTGGTTGAAACATTAAAAGGACAAAAAGAATTTGATGATTCCGGCAACAGTAAATTAGGTTTAATTATTGGACACTACGTTTTACCATCCTTCTTGGCTGGCAAATTTTTTTTTGGGATGACGTTATTTATTGCACTGTTGATATACAAATGGAAAAGTCGGCATTTGTCCATGTACGAAAATATTGAAAATTACTTGGAACATGCCAATTTGATGCCTATCAGATATTCATACAAGGAAATAAAAAAGATGACCGGAGGTTTCAAGGATAAATTGGGTGAAGGAGGATATGGTTCTGTGTTTAAGGGAAAGTTGTGTAGTGGACCTTCTGTGGCAATAAAAATGTTAGGTAAATCAACAGGTAATGGTCAAGATTTTATTAGTGAAGTTGCAACTATCGGAAGAATTCATCATCAAAATATTGTAAAATTGGTTGGATTTTGTGTTGAAGGATCAAAACGTGCTCTTGTTTACGAATTCATGCCTAATGGATCTTTGGATAAAATTATTTTTTCCAAAGATGGAAATATACATTTAAGTTATGATGAAATATATCATATTTCAATTGGAATAGCTAGAGGGATAGCTTATCTTCATCATGGGTGTGAGATGCAAATCCTGCATTTTGATATCAAACCCCACAACATCTTACTAGATGGAAAGCTCACCCCAAAGGTCTCGGACTTTGGATTGGCAAAATTATATCCAATAGACAATAGCGTTGTCACAATGACAGGAGCAAGAGGAACCATTGGGTATATGGCTCCAGAATTATTTTATAATAACATTGGAAGAATATCTCAGAAGGCTGATGTTTATAGCTTTGGAATGCTTCTTATGGAGATGGCAAATAAAAGGAAAAACCTAAATCCACATGCACAACATTCAAGTCAACTGTATTTTCCTTTTTGGATTTACAAATATATTGGAAAAGAAAAAGATATAGATATTGAAGATGTCAAAGAGGAAGAAAAGGAAGAAGTAAAGAAAATGATTATAGTTGCACTTTGGTGCATAAAATTGAAACCAAATGACCGTCCCACAATGAGTGAAGTAGTTAAAATGCTTGAAGGAGACATTGAAAGCTTGAAAATACCTCCAAAGCCTACTTTATTTCCGGATGAAACAATGTCAAGCGACTTAAGCTTCACTAGTTCTTCTAATTCTTCCACGTAA 1317 0.3523 IWDTSGRLDCSLNCHRFLSILSICDGRPIWYQLLLYARDTIYTAWIGLVETLKGQKEFDDSGNSKLGLIIGHYVLPSFLAGKFFFGMTLFIALLIYKWKSRHLSMYENIENYLEHANLMPIRYSYKEIKKMTGGFKDKLGEGGYGSVFKGKLCSGPSVAIKMLGKSTGNGQDFISEVATIGRIHHQNIVKLVGFCVEGSKRALVYEFMPNGSLDKIIFSKDGNIHLSYDEIYHISIGIARGIAYLHHGCEMQILHFDIKPHNILLDGKLTPKVSDFGLAKLYPIDNSVVTMTGARGTIGYMAPELFYNNIGRISQKADVYSFGMLLMEMANKRKNLNPHAQHSSQLYFPFWIYKYIGKEKDIDIEDVKEEEKEEVKKMIIVALWCIKLKPNDRPTMSEVVKMLEGDIESLKIPPKPTLFPDETMSSDLSFTSSSNSST* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1185 438 ProSiteProfiles Protein kinase domain profile. 133 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1185 438 Pfam Protein kinase domain 136 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1185 438 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 429 IPR045874 GO:0004672
Vra6g1185 438 SMART serkin_6 133 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1185 438 Gene3D Transferase(Phosphotransferase) domain 1 208 412 - -
Vra6g1185 438 MobiDBLite consensus disorder prediction 413 438 - -
Vra6g1185 438 Gene3D Phosphorylase Kinase; domain 1 107 207 - -
Vra6g1185 438 SUPERFAMILY Protein kinase-like (PK-like) 118 404 IPR011009 -
Vra6g1185 438 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 14 429 - -
Vra6g1185 438 MobiDBLite consensus disorder prediction 422 438 - -
Vra6g1185 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vra6g1185 438 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1185 Vra-Chr6 20202743 20205961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1185 115 428 Receptor kinase-like Gene Family AT5G38280 48.750 1.18e-103 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1185 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1185 - - gmx:100305367 583.178