Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1183 ATGGCGGAGTCTAGTGTGCTACCTCTCCGAGGTGAGTCCTTGTTGATAGCTCTACTGTTAATGTTCTTGCTTATCGTAAGTAGCAGAGGTGAAAACGAGTGCTCGAAATTGCCTTATTGTCAGTCTGGAGAACCGCATATTAAATTTCCCTTCCAACTCGTCCAGGGGATGACAGATGCATGTGATTCTCCTGGTTTGTGTGTATATTGTAGTGAAAATAAGGAGACCATGCTTGTTCACCCTACAGTAAAACTCCGTGTCACAGACATAAACTACAAATTACAGATTATTTACTTGCAAGATCCAGAAAATTGCCTTCCGAAGAAGTTTCTAAACCTCAACAATTTTACGATTCCTCCTTATCAACTTGATTCATCATATGAACGAGAAAAAAACTACTTGAATTTCTTCGATTGTTCTTCACTTGGACTTCCACACCTCAGAAACAGAGACCAGACATACTCGAGTTCGCAAGACATGATTCGTTGTCCGACTTATGTTTCTAACTCTGACGAAAGTGTGCTTGAATTGGACCTAACATCTTGTTCCAAGATGTTCAACATCATTTCGCAGGCCTCGGCATCTGACCTGCGGGTGAATCAGTTGAATTTGAGATGGTCCGAACCAAACTGTGGTGAGTGCGAAGCAAAAGGCCATAGATGTAAATGGAAGACGAACAGCTCAACGGAAATCGAATGTGTAGACTGCAGTCCCAAACGAACCATTCACATTCCCGAATATTCGATTTTCACTGCTACAGGTTCTATTGTTTTGGGGCTGGTGGTTATTGCAGTGTTTAAGATGGTGCACCATTTTAAAAAGAAAGAAGAAGACCAAGCTAGAGTGGATAAGTTTCTAGAGGATTACAGAGCAGACAAGCCAGCAAGATTTACCTATGCTGATGTAAAAAGAATCACGGGTAATTTTAAAGAAAAGTTAGGGGAAGGAGCTCATGGAGCTGTGTTTAGAGGAAAACTTTCGAATGAGATTCTCGTGGCTGTGAAGATCCTCAATAATACAGAGGGAGATGGGAACGATTTCATCAATGAAGTTGGAATTATGGGAAAAATTCACCACATCAACGTGGTTCGTTTGCTTGGTTTTTGTGCTGAGGGACTCCATCGTGCTCTTGTCTACAATTTGTTTCCAAACGGTTCGCTACAGAGTTTCATATTTCCACCGGATGACAAGGACCATTTTCTTGGCTGGGAGAAGCTGCAACAGATTGCTCATGGCATTGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTGATCGTCCCATTATTCACTTCGACATCAACCCTCACAATGTGTTACTCGATGAAAACTTCATCCCCAAAATTTCTGACTTTGGCTTAGCCAAATTGTGTTCAAAGAATCCTAGTTTGGTGTCCATGACAGCTGCAAGGGGAACCTTGGGATACATTGCACCAGAAGTTTTCTCCAGAAACTTTGGAAATGTGTCTTATAAATCCGATATCTACAGTTATGGAATGTTGTTGTTGGAAATGGTTGGAGGAAGGAAGAATGTGGACATATCTTCAGCACAAAATTTTACTGTTCTGTACCCGGATTGGATCCATAACCTGGTTGATGGAGATATCCATATCCATGTTGAGGATGAAGGTGAAGTTAAAATTGCAAAGAAACTGGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACCGACCATCCATAAAATCTGTCATACAAATGTTAGAAAGTGCAGAGGAAAACCAGTTAACTGTTCCTCCTAACCCATTTCACTCAACGTCCTCCACTTCTACTGGTAGACTCATTTCAACAAGACGTCCTATGGAGTTGGATGTGATTCAGGAATGA 1851 0.416 MAESSVLPLRGESLLIALLLMFLLIVSSRGENECSKLPYCQSGEPHIKFPFQLVQGMTDACDSPGLCVYCSENKETMLVHPTVKLRVTDINYKLQIIYLQDPENCLPKKFLNLNNFTIPPYQLDSSYEREKNYLNFFDCSSLGLPHLRNRDQTYSSSQDMIRCPTYVSNSDESVLELDLTSCSKMFNIISQASASDLRVNQLNLRWSEPNCGECEAKGHRCKWKTNSSTEIECVDCSPKRTIHIPEYSIFTATGSIVLGLVVIAVFKMVHHFKKKEEDQARVDKFLEDYRADKPARFTYADVKRITGNFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGDGNDFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNLFPNGSLQSFIFPPDDKDHFLGWEKLQQIAHGIAKGIEYLHQGCDRPIIHFDINPHNVLLDENFIPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDISSAQNFTVLYPDWIHNLVDGDIHIHVEDEGEVKIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLESAEENQLTVPPNPFHSTSSTSTGRLISTRRPMELDVIQE* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1183 616 Gene3D Phosphorylase Kinase; domain 1 279 381 - -
Vra6g1183 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 616 IPR045874 GO:0004672
Vra6g1183 616 PANTHER RECEPTOR-LIKE KINASE 24 616 - -
Vra6g1183 616 Gene3D Transferase(Phosphotransferase) domain 1 382 589 - -
Vra6g1183 616 Pfam Wall-associated receptor kinase galacturonan-binding 34 101 IPR025287 GO:0030247
Vra6g1183 616 ProSiteProfiles Protein kinase domain profile. 307 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1183 616 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Vra6g1183 616 SUPERFAMILY Protein kinase-like (PK-like) 291 577 IPR011009 -
Vra6g1183 616 Pfam Protein tyrosine and serine/threonine kinase 309 576 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1183 Vra-Chr6 20194799 20197506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1183 82 605 Receptor kinase-like Gene Family AT1G66910 34.783 1.75e-94 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1183 PK_Tyr_Ser-Thr 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1183 - - gmx:100813645 890.567