Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1178 ATGCACACAGCAACGATGAAAAGACGAGTAAGAATACCTATCGTCGTCATCCTTCTACTTATACAAACTTGCGCCGCGGCGCTCAGCTCCAACTGCCCTGCTTCCTCCTGCGGCAATATTCCCAACATAAGTTACCCCTTTCGACTCAGCGGTGACCCATCTCACTGCGGCGACACGAGGTACCAATTGCAGTGTGAGAACAACGCTACTCTTCTAACCCTGTTTTCTGGTAAATACAGAGTCCAAGAAATCGATTACAAGAGATACAAAATCCGAGTGAGTGATGCGGAGGGCGGTACCTGCTCCTCCATGCCTCGCTATTTCTTGCAGTCCGGCAATTTTAGTAACGATTTAATTGGTCCTGGAAGGAATCCGCTGAAATTGGACCCATTTTTTCAACCGTCGATAGCGTATTTCAATTGCAGCTATTCAATCGCTGATGATCCTAGATATGTTGCTGTTGAAGCCAGTGGTTGCGACCTGAGAGGACACGTGTATGCTTTTGTTAGGGATTCGCAAAACGGTTTTGGTTTGAAGGACATCAAGGTTGGGTGCCAGCTGATGGTGGCTACTTTTGCTGGTGTGGGACAGCACAAGTCCAACGAAGCAGTTTCGTACGGTGAAATCTACAAAATGCTTTCGCATGGATTTGAGCTCTCTTGGTTGTTTGTTATCTGTGCAAATCAATGCGGAAAGGGAATAGATTGCAGTGTTGATGAATCCACACATGAAGTTCGTTGTGGCCAGCAAGACTGCCGTTATATCTATGAAGAACCTAACTCAGTCACATACGAATGCAGCATCGGTAGTAATGCAGAAAACATAATTTCCGCAATAATTTTATTTTGCATTGGTCTTTATAGAGGATTGGTGCGAAATTTTGGCTTGAATAAAGCTACAGGATATGATGATGAAATAGCAGCTGAAATAGGAAAAGGTGTCGGAAGGTATATCTTACCGTACTTTATAATACGATTTCTATTTGGTGTGGTAGCTTTTGTTGTGTTGTTGATATATAAATGGGGAAGAAGACATAAATCAAAGTATGAAAATATTGAAGCTTTTCTACAAGAAAATACCCTCGCGCCAATAAGATACTCTTATAAAGAAATAAAGCACATGACGAGGGGTTTTAAGGAAAAGCTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAAAGCTGCGTAGTGGGTCATTTGTTGCGATAAAGATGTTGAGTAAATCAAAGTCTAATGGGCAAGATTTCATTAGTGAAGTTGGAACTATTGGAAGAATACATCATACAAATGTGGTGCGACTTATTGGATTTTGTGTGGAATCATCAAATCATGCTCTTGTTTATGAATTCATGCCTAATGGTTCTCTTGATAAATATATTTTTTCCAAGAAAGATATTATCTCTTTAACTCATAGACAAATATATGAGATTTCTCTTGGAGTGGCTCGTGGTATTGCTTATTTGCATGAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCACATAACATCCTTTTGGACGAAAACTTTGTCCCAAAGGTTTCAGACTTTGGCTTGGCAAGACTTTATCCTACAGACAAAAGTATTATCACTATGACTGATGTCAGGGGAACACTTGGATACATGGCGCCCGAGCTATTTTATCATAATTTTGGAGGAGTATCATACAAGGCAGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAATAAAAAAAGAAATTTTAATCCACATGCAAATGATTCAAGTGAGTTTTTTTTTCCTCTTTGGATATACCATCAATTGAGTGGGGAAAATGAGATTGAAGGAGAAATTGTTACCAAGCAAGAATACAATGATGAGATAAAGAAAATGTTTTTAATTGCATTATGGTGTATACAACTGAAGCCAAGTGATCGTCCTCCCATGAACAAAGTAGTGGAGATGTTGGAAGGAGAACTTGAGAATATTGAAATGCCTCCAAAACCTTCTCTCTATCAGATAAATGATCACAAAACTAAATCCTACGAAACCTCTTCAATTGATTATAGTGGATCGACAAGTTATACTGACGAATATTCTACTTGA 2079 0.392 MHTATMKRRVRIPIVVILLLIQTCAAALSSNCPASSCGNIPNISYPFRLSGDPSHCGDTRYQLQCENNATLLTLFSGKYRVQEIDYKRYKIRVSDAEGGTCSSMPRYFLQSGNFSNDLIGPGRNPLKLDPFFQPSIAYFNCSYSIADDPRYVAVEASGCDLRGHVYAFVRDSQNGFGLKDIKVGCQLMVATFAGVGQHKSNEAVSYGEIYKMLSHGFELSWLFVICANQCGKGIDCSVDESTHEVRCGQQDCRYIYEEPNSVTYECSIGSNAENIISAIILFCIGLYRGLVRNFGLNKATGYDDEIAAEIGKGVGRYILPYFIIRFLFGVVAFVVLLIYKWGRRHKSKYENIEAFLQENTLAPIRYSYKEIKHMTRGFKEKLGQGGFGLVYKGKLRSGSFVAIKMLSKSKSNGQDFISEVGTIGRIHHTNVVRLIGFCVESSNHALVYEFMPNGSLDKYIFSKKDIISLTHRQIYEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFVPKVSDFGLARLYPTDKSIITMTDVRGTLGYMAPELFYHNFGGVSYKADVYSFGMLLMEMANKKRNFNPHANDSSEFFFPLWIYHQLSGENEIEGEIVTKQEYNDEIKKMFLIALWCIQLKPSDRPPMNKVVEMLEGELENIEMPPKPSLYQINDHKTKSYETSSIDYSGSTSYTDEYST* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1178 692 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Vra6g1178 692 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 673 IPR045874 GO:0004672
Vra6g1178 692 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 9 673 - -
Vra6g1178 692 Gene3D Phosphorylase Kinase; domain 1 339 450 - -
Vra6g1178 692 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Vra6g1178 692 Pfam Protein kinase domain 379 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1178 692 Gene3D Transferase(Phosphotransferase) domain 1 451 661 - -
Vra6g1178 692 SMART serkin_6 376 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1178 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Vra6g1178 692 ProSiteProfiles Protein kinase domain profile. 376 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1178 692 SUPERFAMILY Protein kinase-like (PK-like) 361 648 IPR011009 -
Vra6g1178 692 CDD STKc_IRAK 382 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1178 Vra-Chr6 20073411 20094130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1178 14 663 Receptor kinase-like Gene Family AT5G38260 33.976 4.32e-107 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1178 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1178 - - pvu:PHAVU_001G075800g 992.26